Publications Guido Gerig (Full Bios/CV)

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5th Edition  of our ranking of Top Scientists for 2019 in the arena of Computer Science and Electronics.
The ranking is based on the H-Index metric provided by Google Scholar and DBLP.

World Wide Ranking: link
Country Ranking: link
New York University: link

A full list of older publications (before 1998) for electronic transfer can be found on the homepage of my former institution "Image Science Lab, EE Department, Swiss Federal Institute of Technology ETH Zurich, Switzerland": BIWI . Please press the button "Publications" and select dates (optional) and author to get the abstract, bibliography and a gzipped PS-file for ftp transfer.

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2023       Peer reviewed journal papers

  • Tanya St. John, Annette M. Estes, Heather C. Hazlett, Natasha Marrus, Catherine A. Burrows, Kevin Donovan, Santiago Torres Gomez, Rebecca L. Grzadzinski, Julia Parish-Morris, Rachel Smith, Martin Styner, Dea Garic, Juhi Pandey, Chimei M. Lee, Robert T. Schultz, Kelly N. Botteron, Lonnie Zwaigenbaum, Joseph Piven, Stephen R. Dager, and IBIS Network. Association of Sex With Neurobehavioral Markers of Executive Function in 2-Year-Olds at High and Low Likelihood of Autism. JAMA Network Open, 6(5):e2311543{e2311543, 05 2023.


2023       Peer reviewed conference and workshop papers

  • Zhangsihao Yang, Mengwei Ren, Kaize Ding, Guido Gerig, Yalin Wang, Keypoint-Augmented Self-Supervised Learning for Medical Image Segmentation with Limited Annotation, accepted NeurIPS, to appear Dec. 2023
  • Mathieu Leclercq, Connor Bowley, Harald Scheirich, Jean-Christophe Fillion-Robin, Steve Pizer, James Fishbaugh, Guido Gerig, Martin Styner, Beatriz Paniagua, SlicerSALT: From Medical Images to Quantitative Insights of Anatomy, Shape in Medical Imaging: International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings, Vol. 14350, pages 201ff, Springer nature
  • Mengwei Ren, Mauricio Delbracio, Hossein Talebi, Guido Gerig, and Peyman Milanfar. Multiscale Structure Guided Diffusion for Image Deblurring. In Proceedings International Computer Vision ICCV, Oct 2023, pages 10721-10733. arXiv preprint arXiv:2212.01789.
  • Axel Elaldi, Guido Gerig, and Neel Dey. E(3)x SO(3)-equivariant networks for spherical deconvolution in di usion MRI. CoRR, Medical Imaging with Deep Learning (MIDL) 2023, abs/2304.06103, 2023.
  • Ye Han, Jared Vicory, Guido Gerig, Patricia Sabin, Hannah Dewey, Silvani Amin, Ana Sulentic, Christian Hertz, Matthew A. Jolley, Beatriz Paniagua, and James Fishbaugh. Hierarchical geodesic polynomial model for multilevel analysis of longitudinal shape. In Alejandro F. Frangi, Marleen de Bruijne, Demian Wassermann, and Nassir Navab, editors, Information Processing in Medical Imaging - 28th International Conference, IPMI 2023, San Carlos de Bariloche, Argentina, June 18-23, 2023, Proceedings, volume 13939 of Lecture Notes in Computer Science, pages 810-821. Springer, 2023.
  •  Jared Vicory, Ye Han1, Juan Prieto, David Allemang, Mathieu Leclercq, Connor Bowley, Steve, Pizer, James Fishbaugh, Guido Gerig, Martin Styner, and Beatriz Paniagua, "SlicerSALT: From medical images to quantitative insights of anatomy", MICCAI 2023 ShapeMI workshop, Oct. 2023
  •  Shijie Li*, Mengwei Ren*, Thomas Arch, Guido Gerig, “Microscopy image segmentation via point and shape regularized data synthesis”, MICCAI 2023 DALI ( Data Augmentation, Labeling, and Imperfection) Workshop), *equal contribution, Oct. 2023
  • Shijie Li, Guido Gerig, Thomas Ach, Improved counting and localization from density maps for object detection in 2d and 3d microscopy imaging, 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), pages 1-5, 2003/4/18


2023   Reviewed abstracts and reviewed open access journals journal papers

  • Jessica Bullins Girault, Muhamed Talovic, Tomoyuki Nishino, Zoe Hawks, Savannah Davis, Abraham Snyder, Catherine A Burrows, Jed T Elison, Kelly Botteron, Annette Estes, et al. Functional connectivity between the visual and salience networks re ects individual variation in social behavior in a school-age sample enriched for autism spectrum disorder. INSAR 2023, 2023.
  • Shijie Li, Palaiologos Alexopoulos, Anse Vellappally, Joel S Schuman, Gadi Wollstein, and Guido Gerig. Denoising of optical coherence tomography scans via selfsupervised deep learning. Investigative Ophthalmology & Visual Science, 64(8):5449{ 5449, 2023.
  •  Guido Gerig, Palaiologos Alexopoulos, Dimitri Szezurek, Anse Vellappally, Shijie Li, James Fishbaugh, Joel S Schuman, and Gadi Wollstein. Novel image analysis for automated quantification of dynamics of 3d lamina cribrosa microstructure under controlled iop modulation imaged by in-vivo oct. Investigative Ophthalmology & Visual Science, 64(8):1372–1372, 2023.
  • Anse Vellappally, Guido Gerig, Palaiologos Alexopoulos, Sarah Segal, Ronald Zambrano, Allison Toyos, Shijie Li, TingFang Lee, Jiyuan Hu, Joel S Schuman, et al. A novel tool for generating gold standard to validate image segmentation. Investigative Ophthalmology & Visual Science, 64(8):OD60{OD60, 2023.


2022   Peer reviewed journal papers

  • Jessica B. Girault, Kevin Donovan, Zoe Hawks, Muhamed Talovic, Elizabeth Forsen, Jed T. Elison, Mark D. Shen, Meghan R. Swanson, Jason J. Wol , Sun Hyung Kim, Tomoyuki Nishino, Savannah Davis, Abraham Z. Snyder, Kelly N. Botteron, Annette M. Estes, Stephen R. Dager, Heather C. Hazlett, Guido Gerig, Robert McKinstry, Juhi Pandey, Robert T. Schultz, Tanya St. John, Lonnie Zwaigenbaum, Alexandre Todorov, Young Truong, Martin Styner, John R. Pruett, John N. Constantino, and Joseph and Piven. Infant visual brain development and inherited genetic liability in autism. American Journal of Psychiatry, 179(8):573{585, 2022. PMID: 35615814.
  •  Mark D. Shen, Meghan R. Swanson, Jason J. Wol , Jed T. Elison, Jessica B. Girault, Sun Hyung Kim, Rachel G. Smith, Michael M. Graves, Leigh Anne H. Weisenfeld, Lisa Flake, Leigh MacIntyre, Julia L. Gross, Catherine A. Burrows, Vladimir S. Fonov, D. Louis Collins, Alan C. Evans, Guido Gerig, Robert C. McKinstry, Juhi Pandey, Tanya St. John, Lonnie Zwaigenbaum, Annette M. Estes, Stephen R. Dager, Robert T. Schultz, Martin A. Styner, Kelly N. Botteron, Heather C. Hazlett, and Joseph Piven. Subcortical brain development in autism and fragile x syndrome: Evidence for dynamic, age- and disorder-speci c trajectories in infancy. American Journal of Psychiatry, 179(8):562{572, 2022. PMID: 35331012.


2022   Peer reviewed conference and workshop papers

  •  Tyler McFayden, Joshua Rutsohn, Gizem Cetin, Meghan R Swanson, Shoba S Meera, Jason J Wol , Kelly Botteron, Stephen Dager, Annette Estes, Guido Gerig, Robert McKinstry, Juhi Pandey, Robert T Schultz, Tanya St John, Martin Styner, Kinh Truong, Lonnie Zwaigenbaum, Heather Cody Hazlett, Joseph Piven, and Jessica Bullins Girault. Longitudinal white matter microstructure and language development in high-risk infants at 6-, 12-, and 24-months. INSAR 2022, May 2022.
  • Batool Abbas, Riccardo Lattanzi, Catherine Petchprapa, and Guido Gerig. 2d/3d quasi-intramodal registration of quantitative magnetic resonance images. In Alessa Hering, Julia A. Schnabel, Miaomiao Zhang, Enzo Ferrante, Mattias P. Heinrich, and Daniel Rueckert, editors, Biomedical Image Registration - 10th International Workshop, WBIR 2022, Munich, Germany, July 10-12, 2022, Proceedings, volume 13386 of Lecture Notes in Computer Science, pages 198{205. Springer, 2022.
  •  Neel Dey, Jo Schlemper, Seyed Sadegh Mohseni Salehi, Bo Zhou, Guido Gerig, and Michal Sofka. Contrareg: Contrastive learning of multi-modality unsupervised deformable image registration. In Linwei Wang, Qi Dou, P. Thomas Fletcher, Stefanie Speidel, and Shuo Li, editors, Medical Image Computing and Computer Assisted Intervention - MICCAI 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part VI, volume 13436 of Lecture Notes in Computer Science, pages 66{77. Springer, 2022.
  •  Mengwei Ren, Mauricio Delbracio, Hossein Talebi, Guido Gerig, and Peyman Milanfar. Image deblurring with domain generalizable di usion models. CoRR, abs/2212.01789, 2022.
  •  Mengwei Ren, Neel Dey, Martin Styner, Kelly Botteron, and Guido Gerig. Local spatiotemporal representation learning for longitudinally-consistent neuroimage analysis. In S. Koyejo, S. Mohamed, A. Agarwal, D. Belgrave, K. Cho, and A. Oh, editors, Advances in Neural Information Processing Systems, volume 35, pages 13541{13556. Curran Associates, Inc., 2022.
  •  Mengwei Ren, Neel Dey, Martin A. Styner, Kelly N. Botteron, and Guido Gerig. Local spatiotemporal representation learning for longitudinally-consistent neuroimage analysis. CoRR, abs/2206.04281, 2022.
  •  A novel method of enhancing in vivo OCT lamina cribrosa visualization for automated segmentation, volume 63 of Invest. Ophthalmol. Vis. Sci., 2022.


2021   Peer reviewed journal papers

  • Cardenas-de-la Parra, JD Lewis, VS Fonov, KN Botteron, RC McKinstry, G Gerig, JR Pruett Jr, SR Dager, JT Elison, MA Styner, et al. A voxel-wise assessment of growth differences in infants developing autism spectrum disorder. NeuroImage: Clinical, 29:102551, 2021.  https://doi.org/10.1016/j.neuroimage.2020.116821
  • M. Ren, N. Dey, J. Fishbaugh, and G. Gerig. Segmentation-Renormalized Deep Feature Modulation for Unpaired Image Harmonization. IEEE Trans Med Imaging, PP, Feb 2021. https://pubmed.ncbi.nlm.nih.gov/33591913/
  • Talovic, Mary Beth Nebel, Jessica B. Girault, Savannah Davis, Scott Marek, Benjamin A. Seitzman, Adam T. Eggebrecht, Jed Elison, Stephen Dager, Matthew W. Mosconi, Lawrence Tychsen, Abraham Z. Snyder, Kelly Botteron, Annette Estes, Alan Evans, Guido Gerig, Heather C. Hazlett, Robert C. McKinstry, Juhi Pandey, Robert T. Schultz, Martin Styner, Jason J. Wol , Lonnie Zwaigenbaum, Lori Markson, Steven E. Petersen, John N. Constantino, Desir ~ Al'e A. White, Joseph Piven, and John R. Pruett. A prospective evaluation of infant cerebellar-cerebral functional connectivity in relation to behavioral development in autism spectrum disorder. Biological Psychiatry Global Open Science, 2021. 
  •  Liying Peng, Lanfen Lin, Yusen Lin, Yen-wei Chen, Zhanhao Mo, Roza M. Vlasova, Sun Hyung Kim, Alan C. Evans, Stephen R. Dager, Annette M. Estes, Robert C. McKinstry, Kelly N. Botteron, Guido Gerig, Robert T. Schultz, Heather C. Hazlett, Joseph Piven, Catherine A. Burrows, Rebecca L. Grzadzinski, Jessica B. Girault, Mark D. Shen, and Martin A. Styner. Longitudinal prediction of infant mr images with multi-contrast perceptual adversarial learning. Frontiers in Neuroscience, 15, 2021.

2021   Peer reviewed full length conference papers

  •  S. Li, N. Dey, K. Bermond, Leon von der Embde, Ch. Curcio, T. Ach, and Gerig G. Point-supervised segmentation of microscopy images and volumes via objectness regularization. In 17th IEEE International Symposium on Biomedical Imaging, ISBI, 2021. in print, to appear April 2021.
  • Neel Dey, Mengwei Ren, Adrian V. Dalca, and Guido Gerig. Generative adversarial registration for improved conditional deformable templates. In 2021 IEEE/CVF International Conference on Computer Vision, ICCV 2021, Montreal, QC, Canada, October 10-17, 2021, pages 3909{3921. IEEE, 2021. 
  • Axel Elaldi, Neel Dey, Heejong Kim, and Guido Gerig. Equivariant spherical deconvolution: Learning sparse orientation distribution functions from spherical data. In Aasa Feragen, Stefan Sommer, Julia A. Schnabel, and Mads Nielsen, editors, Information Processing in Medical Imaging - 27th International Conference, IPMI 2021, Virtual Event, June 28-June 30, 2021, Proceedings, volume 12729 of Lecture Notes in Computer Science, pages 267-278. Springer, 2021. 
  • Shijie Li, Neel Dey, Katharina Bermond, Leon von der Emde, Christine A. Curcio, Thomas Ach, and Guido Gerig. Point-supervised segmentation of microscopy images and volumes via objectness regularization. In 18th IEEE International Symposium on Biomedical Imaging, ISBI 2021, Nice, France, April 13-16, 2021, pages 1558-1562. IEEE, 2021. 
  • Mengwei Ren, Heejong Kim, Neel Dey, and Guido Gerig. Q-space conditioned translation networks for directional synthesis of di usion weighted images from multimodal structural MRI. In Marleen de Bruijne, Philippe C. Cattin, Stephane Cotin, Nicolas Padoy, Stefanie Speidel, Yefeng Zheng, and Caroline Essert, editors, Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27 - October 1, 2021, Proceedings, Part VII, volume 12907 of Lecture Notes in Computer Science, pages 530{540. Springer, 2021. 

2021   Reviewed abstracts and reviewed open access journals

  • tbd


2020   Peer reviewed journal papers

  • Astrid Schmied, Takahiro Soda, Guido Gerig, Martin Styner, Meghan R.Swanson, Jed T.Elison, Mark D.Shen, Robert C.McKinstry, John R.Pruett Jr, Kelly N.Botteron, Annette M.Estes, Stephen R.Dager, Heather C.Hazlett, Robert T.Schultz, JosephPiven, Jason J.Wolff, IBIS Network, "Sex differences associated with corpus callosum development in human infants: A longitudinal multimodal imaging study", NeuroImage, online 7 April 2020,  https://doi.org/10.1016/j.neuroimage.2020.116821
  •  Eggebrecht, A. T., Elison, J. T., Feczko, E., Todorov, A., Wolff, J. J., Kandala, S.,Chloe M Adams, Abraham Z Snyder, John D Lewis, Annette M Estes, Lonnie Zwaigenbaum, Kelly N Botteron, Robert C McKinstry, John N Constantino, Alan Evans, Heather C Hazlett, Stephen Dager, Sarah J Paterson, Robert T Schultz, Martin A Styner, Guido Gerig, Samir Das, Penelope Kostopoulos, Bradley L Schlaggar, Steven E Petersen, Joseph Piven, John R Pruett Jr, (2020). Joint Attention and Brain Functional Connectivity in Infants and Toddlers (vol 27, pg 1709, 2017). CEREBRAL CORTEX, 30(5), 3433-3434.
  • Mostapha M, Kim SH, Evans AC, Dager SR, Estes AM, Mckinstry RC, Botteron KN, Gerig G, Pizer SM, Schultz RT, Hazlett HC. A Novel Method for High-Dimensional Anatomical Mapping of Extra-Axial Cerebrospinal Fluid: Application to the Infant Brain. Frontiers in Neuroscience. 2020;14:965. 
  • Amanda C Bordelon, Sungmin Hong, Yohann Bearzi, Clement Vachet, and Guido Gerig. Visualizing air voids and synthetic fibers from x-ray computed tomographic images of concrete. In 2020 Intermountain Engineering, Technology and Computing (IETC), pages 1{6. IEEE, 2020.
  • J. B. Girault, M. R. Swanson, S. S. Meera, R. L. Grzadzinski, M. D. Shen, C. A. Burrows, J. J. Wolff, J. Pandey, T. S. John, A. Estes, L. Zwaigenbaum, K. N. Botteron, H. C. Hazlett, S. R. Dager, R. T. Schultz, J. N. Constantino, J. Piven, C. Chappell, D. Shaw, J. Elison, M. Styner, G. Gerig, R. McKinstry, J. Pruett, A. C. Evans, D. L. Collins, V. Fonov, L. MacIntyre, S. Das, H. Gu, K. Truong, H. Volk, and D. Fallin. Quantitative trait variation in ASD probands and toddler sibling outcomes at 24 months. J Neurodev Disord, 12(1):5, 02 2020.

2020   Peer reviewed full length conference papers

  •  Liying Peng, Lanfen Lin, Yusen Lin, Yue Zhang, Roza M Vlasova, Juan Prieto, Yen-wei Chen, Guido Gerig, Martin Styner, (2020) Multi-modal Perceptual Adversarial Learning for Longitudinal Prediction of Infant MR Images. In: Hu Y. et al. (eds) Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis. ASMUS 2020, PIPPI 2020. Lecture Notes in Computer Science, vol 12437. Springer, Cham. https://doi.org/10.1007/978-3-030-60334-2_28
  •  Sharma A., Gerig G. (2020) Trajectories from Distribution-Valued Functional Curves: A Unified Wasserstein Framework. In: Martel A.L. et al. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science, vol 12267. Springer, Cham. https://doi.org/10.1007/978-3-030-59728-3_34 
  •  Kim H., Hong S., Styner M., Piven J., Botteron K., Gerig G. (2020) Hierarchical Geodesic Modeling on the Diffusion Orientation Distribution Function for Longitudinal DW-MRI Analysis. In: Martel A.L. et al. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science, vol 12267. Springer, Cham. https://doi.org/10.1007/978-3-030-59728-3 
  • Guillaume Gisbert, Neel Dey, Hiroshi Ishikawa, Joel Schuman, James Fishbaugh, Guido Gerig (2020), Self-supervised Denoising via Diffeomorphic Template Estimation: Application to Optical Coherence Tomography, In Ophthalmic Medical Image Analysis 2020, pages 72{82. Springer, arXiv preprint arXiv:2008.08024, 2020
  • Heejong Kim, Martin Styner, Joseph Piven, and Guido Gerig. A framework to construct a longitudinal dw-mri infant atlas based on mixed e ects modeling of dodf coecients. In Computational Di usion MRI, pages 149{159. Springer, 2020.
  • Anuja Sharma and Guido Gerig. Trajectories from distribution-valued functional curves: A unified wasserstein framework. In Anne L. Martel, Purang Abolmaesumi, Danail Stoyanov, Diana Mateus, Maria A. Zuluaga, S. Kevin Zhou, Daniel Racoceanu, and Leo Joskowicz, editors, Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4- 8, 2020, Proceedings, Part VII, volume 12267 of Lecture Notes in Computer Science, pages 343{353. Springer, 2020. 

2020   Reviewed abstracts and reviewed open access journals

  • Heejong Kim, Martin Styner, Joseph Piven, Guido Gerig, "A framework to construct a longitudinal DW-MRI infant atlas based on mixed effects modeling of dODF coefficients", arXiv preprint arXiv:2003.05091, 2020/3/11
  • Guillaume Gisbert, Neel Dey, Hiroshi Ishikawa, Joel Schuman, James Fishbaugh, Guido Gerig, Improved Denoising of Optical Coherence Tomography via Repeated Acquisitions and Unsupervised Deep Learning, Investigative Ophthalmology & Visual Science, 61(9), The Association for Research in Vision and Ophthalmology, 2020/7/21, link 

2019  Peer reviewed journal papers

  • Cloos MA, Assländer J, Abbas B, Fishbaugh J, Babb JS, Gerig G, Lattanzi R., "Rapid Radial T1 and T2 Mapping of the Hip Articular Cartilage With Magnetic Resonance Fingerprinting.", J Magn Reson Imaging. 2019/9, 50(3), 810-815,  doi: 10.1002/jmri.26615. [Epub ahead of print], PMID: 30584691, DOI: 10.1002/jmri.26615
  • Dey N, Hong S, Ach T, Koutalos Y, Curcio CA, Smith RT, Gerig G., "Tensor decomposition of hyperspectral images to study autofluorescence in age-related macular degeneration.", Med Image Anal. 2019 May 31;56:96-109. doi: 10.1016/j.media.2019.05.009. [Epub ahead of print], PMID: 31203169, link-doi, pdf
  • Claire J. McKinnon, Adam T. Eggebrecht, Alexandre Todorov, Jason J. Wol , Jed T. Elison, Chloe M. Adams, Abraham Z. Snyder, Annette M. Estes, Lonnie Zwaigenbaum, Kelly N. Botteron, Robert C. McKinstry, Natasha Marrus, Alan Evans, Heather C. Hazlett, Stephen R. Dager, Sarah J. Paterson, Juhi Pandey, Robert T. Schultz, Martin A. Styner, Guido Gerig, Bradley L. Schlaggar, Steven E. Petersen, Joseph Piven, and John R. Pruett. Restricted and repetitive behavior and brain functional connectivity in infants at risk for developing autism spectrum disorder. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 4(1):50-61, 2019.30446435
  • Paul A. Yushkevich, Artem Paschinskiy, Ipek Oguz, Suyash Mohan, J. Eric Schmitt, Joel M. Stein, Dzenan Zukic, Jared Vicory, Matthew McCormick, Natalie Yushkevich, Nadav Schwartz, Yang Gao, Guido Gerig, "User-Guided Segmentation of Multi-Modality Medical Imaging Datasets with ITK-SNAP", Neuroinformatics 17(1): 83-102 (2019), Springer US, 29946897

2019   Peer reviewed full length conference papers

  • James Fishbaugh, Martin Styner, Karen Grewen, John Gilmore, Guido Gerig, Spatiotemporal Modeling for Image Time Series with Appearance Change: Application to Early Brain Development, MICCAI 2019 Workshop on Mathematical Foundations of Computational Anatomy, MBIA/MFCA@MICCAI : 174-185
  • Heejong Kim, Joseph Piven, Guido Gerig, and the IBIS Network, A framework to construct a longitudinal DW-MRI infant atlas based on mixed effects modeling of dODF coeffcients, MICCAI 2019 Workshop on Computational Diffusion MRI, CDMRI'19, in print Springer LNCS, to appear Oct. 2020, arXiv preprint arXiv:2003.05091
  • Dey N, Curcio CA, Messinger, J., Smith RT, Gerig G., "Understanding Fixation in Fluorescence Microscopy via Robust Non-negative Tensor Factorization, Atlas-based Motion Correction and Functional Statistics, MICCAI (1) : 658-666
  • Hong, S., Fishbaugh, J., Gerig G., "Hierarchical Multi-Geodesic Model for Longitudinal Analysis of Temporal Trajectories of Anatomical Shape and Covariates", MICCAI (4) : 57-65
  • James Fishbaugh and Guido Gerig, ACCELERATION CONTROLLED DIFFEOMORPHISMS FOR NONPARAMETRIC IMAGE REGRESSION, ISBI : 1488-1491
  • Sadhana Ravikumar, Laura Wisse, Yang Gao, Guido Gerig, Paul Yushkevich, FACILITATING MANUAL SEGMENTATION OF 3D DATASETS USING CONTOUR AND INTENSITY GUIDED INTERPOLATION, ISBI : 714-718
  • Neel Dey, Shijie Li, Katharina Bermond, Rainer Heintzmann, Christine A. Curcio, Thomas Ach, and Guido Gerig, "Multi-modal Image Fusion for Multispectral Super-resolution in Microscopy", SPIE Imaging, Feb. 2019, Medical Imaging: Image Processing : 109490D
  • James Fishbaugh, Beatriz Paniagua, Mahmoud Mostapha, Martin Styner, Veronica Murphy, John Gilmore, and Guido Gerig, "Model selection for spatiotemporal modeling of early childhood sub-cortical development", Proc SPIE Int Soc Opt Eng. 2019 Feb;10949. pii: 109490L. doi: 10.1117/12.2513030. Epub 2019 Mar 15, PMID: 31073259, Medical Imaging: Image Processing : 109490L
  • Heejong Kim, Joseph Piven, Guido Gerig, and the IBIS Network, "Longitudinal Structural Connectivity in the Developing Brain with Projective Non-negative Matrix Factorization", Medical Imaging: Image Processing : 109490Q
  • Batool Abbas, James Fishbaugh, Catherine Petchprapa, Riccardo Lattanzi, and Guido Gerig, "Analysis of the kinematic motion of the wrist from 4D magnetic resonance imaging", Medical Imaging: Image Processing : 109491E

2018   Peer reviewed journal papers

  • N. Marrus, L. P. Hall, S. J. Paterson, J. T. Elison, J. J. Wol , M. R. Swanson, J. Parish-Morris, A. T. Eggebrecht, J. R. Pruett, H. C. Hazlett, L. Zwaigenbaum, S. Dager, A. M. Estes, R. T. Schultz, K. N. Botteron, J. Piven, J. N. Constantino, J. Piven, H. C. Hazlett, C. Chappell, S. Dager, A. Estes, D. Shaw, K. Botteron, R. McKinstry, J. Constantino, J. Pruett, R. T. Schultz, S. Paterson, L. Zwaigenbaum, J. Elison, A. C. Evans, D. L. Collins, G. B. Pike, V. Fonov, P. Kostopoulos, S. Das, G. Gerig, M. Styner, and H. Gu. Language delay aggregates in toddler siblings of children with autism spectrum disorder. J Neurodev Disord, 10(1):29, Oct 2018. 30348077
  • J. J. Wol , A. F. Dimian, K. N. Botteron, S. R. Dager, J. T. Elison, A. M. Estes, H. C. Hazlett, R. T. Schultz, L. Zwaigenbaum, J. Piven, C. Chappell, D. Shaw, R. McKinstry, J. Constantino, J. Pruett, J. Pandey, S. Paterson, J. Elison, A. C. Evans, D. L. Collins, G. B. Pike, V. Fonov, P. Kostopoulos, S. Das, L. MacIntyre, G. Gerig, M. Styner, and H. Gu. A longitudinal study of parent-reported sensory responsiveness in toddlers at-risk for autism. J Child Psychol Psychiatry, Oct 2018. 30350375
  • Meghan R Swanson, Mark D Shen, Jason J Wolff, Brian Boyd, Mark Clements, James Rehg, Jed T Elison, Sarah Paterson, Julia Parish-Morris, J Chad Chappell, Heather C Hazlett, Robert W Emerson, Kelly Botteron, Juhi Pandey, Robert T Schultz, Stephen R Dager, Lonnie Zwaigenbaum, Annette M Estes, Joseph Piven, IBIS Network, D Shaw, R McKinstry, J Constantino, J Pruett, C Evans, L llins, B Pike, V Fonov, P Kostopoulos, S Das, G Gerig, M Styner, H Gu, Naturalistic Language Recordings Reveal "Hypervocal" Infants at High Familial Risk for Autism, Child development 89 (2), e60-e73, March 2018(3), 28295208
  • Swanson, M.R., Wolff, J.J., Shen, M.D., Styner, M., Estes, A., Gerig, G., McKinstry, R.C., Botteron, K., Piven, J., Hazlett, H.C., for the IBIS Network. Development of white matter circuitry in infants with fragile X syndrome. JAMA Psychiatry. May 2018.  10.1001/jamapsychiatry.2018.0180, JAMA link to article
            Press coverage: Health-News-Digest,  Neuroscience News, Science Daily, Futurity,
  • Marrus N, Eggebrecht AT, Todorov A, Elison JT, Wolff JJ, Cole L, Gao W, Pandey J, Shen MD, Swanson MR, Emerson RW, Klohr CL, Adams CM, Estes AM, Zwaigenbaum L, Botteron KN, McKinstry RC, Constantino JN, Evans AC, Hazlett HC, Dager SR, Paterson SJ, Schultz RT, Styner MA, Gerig G; IBIS Network, Schlaggar BL, Piven J, Pruett JR Jr., "Walking, Gross Motor Development, and Brain Functional Connectivity in Infants and Toddlers", Cereb Cortex.2018 Feb 1;28(2):750-763. 29186388, doi: 10.1093/cercor/bhx313, PubMed, Press Release

2018   Peer reviewed full length conference papers

  • Hong, S., Fishbaugh, J., Gerig, G.: 4d continuous medial representation trajectory estimation for longitudinal shape analysis. In: ShapeMI 2018, Lecture Notes in Computer Science, vol 11167. Springer, Cham, Sept. 2018
  • Jared Vicory, Laura Pascal, Pablo Hernandez, James Fishbaugh, Juan Prieto, Mahmoud Mostapha, Chao Huang, Hina Shah, Junpyo Hong, Zhiyuan Liu, Loic Michoud, Jean-Christophe Fillion-Robin, Guido Gerig, Hongtu Zhu, Stephen M. Pizer, Martin Styner, Beatriz Paniagua, SlicerSALT: Shape AnaLysis Toolbox, In: Reuter M., Wachinger C., Lombaert H., Paniagua B., Lüthi M., Egger B. (eds) Shape in Medical Imaging. ShapeMI 2018. Lecture Notes in Computer Science, vol 11167. Springer, Cham, Sept 2018
  • Mathilde Ravier, Sungmin Hong, Charly Girot, Hiroshi Ishikawa, Jenna Tauber, Gadi Wollstein, Joel Schuman, James Fishbaugh, Guido Gerig, "Analysis of Morphological Changes of Lamina Cribrosa Under Acute Intraocular Pressure Change", International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2018/9/16, pp. 364-371, Springer Verlag, LNCS, volume 11071
  • Beatriz Paniagua, Marius George Linguraru, Lucia Cevidanes, Matt McCormick, Jean-Christophe Fillion-Robin, James Fishbaugh, Guido Gerig, Andinet Enquobahrie, "Pediatric Craniofacial Image Analysis: A Software Perspective", 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'18, July 2018
  • James Fishbaugh, Laura Pascal, Luke Fischer, Tung Nguyen, Celso Boen, Joao Goncalves, Guido Gerig, Beatriz Paniagua, ESTIMATING SHAPE CORRESPONDENCE FOR POPULATIONS OF OBJECTS WITH COMPLEX TOPOLOGY, IEEE International Symposium on Biomedical Imaging, IEEE ISBI 2018, April 5, 2018
  • Sungmin Hong, James Fishbaugh, Guido Gerig, 4D CONTINUOUS MEDIAL REPRESENTATION BY GEODESIC SHAPE REGRESSION, IEEE International Symposium on Biomedical Imaging, IEEE ISBI 2018, April 5, 2018
  • Yang Gao, Jeff Phillips, Yan Zheng, Renqiang Min, P. Thomas Fletcher, Guido Gerig, Fully Convolutional Structured LSTM Networks for Joint 4D Medical Image Segmentation, IEEE International Symposium on Biomedical Imaging, IEEE ISBI 2018, April 5, 2018
  • Mahmoud Mostapha, Mark D. Shen, SunHyung Kim, Meghan Swanson, D Louis Collins, Vladimir Fonov, Guido Gerig, Joseph Piven, Martin A. Styner, and the IBIS Network, A Novel Framework for the Local Extraction of Extra-Axial, Cerebrospinal Fluid from MR Brain Images, Proc SPIE Int Soc Opt Eng, Medical Imaging 2018: Image Processing 10574, 105740V, Feb. 2018. Link   , https://doi.org/10.1117/12.2293116

2018    Reviewed abstracts and reviewed open access journals

  • James Fishbaugh, Sungmin Hong, Hiroshi Ishikawa, Mathilde Ravier, Gadi Wollstein, Joel S Schuman, Guido Gerig, "Stability Analysis of Lamina Cribrosa Structure in Repeated Optical Coherence Tomography Scans", Investigative Ophthalmology & Visual Science 59 (9), pp. 2103-2103, The Association for Research in Vision and Ophthalmology (ARVO), 2018/7/13
  • Sungmin Hong, Mathilde Ravier, Hiroshi Ishikawa, Charly Girot, Jenna Tauber, Gadi Wollstein, Joel S Schuman, James Fishbaugh, Guido Gerig, "Groupwise 3D Nonlinear Registration of OCT Image Series for Analyzing Dynamic Lamina Cribrosa Changes", Investigative Ophthalmology & Visual Science 59 (9), pp. 1682-1682, The Association for Research in Vision and Ophthalmology (ARVO), 2018/7/13
  • Ravier, Mathilde; Hong, Sungmin; Ishikawa, Hiroshi; Girot, Charly, Tauber, Jenna; Wollstein, Gadi; Schuman, Joel S.; Fishbaugh, James; Gerig, Guido, "3D Analysis of Structural Changes of the Lamina Cribrosa Under Intraocular Pressure on Swept Source OCT Images", Investigative Ophthalmology & Visual Science 59 (9), pp. xxxxxx, The Association for Research in Vision and Ophthalmology (ARVO), 2018/7/13

2017   Peer reviewed journal papers

  • Mitra A, Snyder AZ, Tagliazucchi E, Laufs H, Elison J, Emerson RW, Shen MD, Wolff JJ, Botteron KN, Dager S, Estes AM, Evans A, Gerig G, Hazlett HC, Paterson SJ, Schultz RT, Styner MA, Zwaigenbaum L; IBIS Network, Schlaggar BL, Piven J, Pruett JR Jr, Raichle M., "Resting-state fMRI in sleeping infants more closely resembles adult sleep than adult wakefulness", PLoS One. 2017 Nov 17;12(11):e0188122. doi: 10.1371/journal.pone.0188122. eCollection 2017, link
  • P. A. Yushkevich and G. Gerig, "ITK-SNAP: An Intractive Medical Image Segmentation Tool to Meet the Need for Expert-Guided Segmentation of Complex Medical Images," in IEEE Pulse, vol. 8, no. 4, pp. 54-57, July-Aug. 2017. doi: 10.1109/MPUL.2017.2701493 , link pdf
  • Robert W. Emerson, Chloe Adams, Tomoyuki Nishino, Heather Cody Hazlett, Jason J. Wolff, Lonnie Zwaigenbaum, John N. Constantino, Mark D. Shen, Meghan R. Swanson, Jed T. Elison, Sridhar Kandala, Annette M. Estes, Kelly N. Botteron, Louis Collins, Stephen R. Dager, Alan C. Evans, Guido Gerig, Hongbin Gu, Robert C. McKinstry, Sarah Paterson, Robert T. Schultz, Martin Styner, IBIS Network, Bradley L. Schlaggar, John R. Pruett Jr and Joseph Piven, "Functional neuroimaging of high-risk 6-month-old infants predicts a diagnosis of autism at 24 months of age", Science Translational Medicine  07 Jun 2017: Vol. 9, Issue 393, eaag2882 DOI: 10.1126/scitranslmed.aag2882, link
                    NIH DIRECTOR'S BLOG (Dr. Francis Collins)
  • James Fishbaugh, Stanley Durrleman, Marcel Prastawa, Guido Gerig, "Geodesic Shape Regression with Multiple Geometries and Sparse Parameters," Med. Image Anal., Elsevier, vol. 39,  pages 1-17, July 2017,  https://doi.org/10.1016/j.media.2017.03.008, link to Paper
  • John D Lewis, Alan C Evans, John R Pruett, Kelly N Botteron, Robert C McKinstry, Lonnie Zwaigenbaum, Annette Estes, D Louis Collins, Penelope Kostopoulos, Guido Gerig, Stephen Dager, Sarah Paterson, Robert T Schultz, Martin Styner, Heather Hazlett, Joseph Piven, IBIS network, "The Emergence of Network Inefficiencies in Infants with Autism Spectrum Disorder", Biological Psychiatry, Elsevier, 03/16/2017, link, pdf
  • Mark D Shen, Sun Hyung Kim, Robert C McKinstry, Hongbin Gu, Heather C Hazlett, Christine W Nordahl, Robert E Emerson, Dennis Shaw, Jed T Elison, Meghan R Swanson, Vladimir S Fonov, Guido Gerig, Stephen R Dager, Kelly N Botteron, Sarah Paterson, Robert T Schultz, Alan C Evans, Annette M Estes, Lonnie Zwaigenbaum, Martin A Styner, David G Amaral, Joseph Piven, IBIS Network,  "Increased Extra-axial Cerebrospinal Fluid in High-Risk Infants who Later Develop Autism", Biological Psychiatry, Elsevier, 03/06/2017, link, pdf
  • Jason J Wolff, Meghan R Swanson, Jed T Elison, Guido Gerig, John R Pruett, Martin A Styner, Clement Vachet, Kelly N Botteron, Stephen R Dager, Annette M Estes, Heather C Hazlett, Robert T Schultz, Mark D Shen, Lonnie Zwaigenbaum, Joseph Piven, "Neural circuitry at age 6 months associated with later repetitive behavior and sensory responsiveness in autism", Molecular Autism, Vol. 8, Issue 1, Pages 8, 03/04/2017, PMID: 28316772, free article, link, pdf
  • Heather Cody Hazlett,  Hongbin Gu, Brent C. Munsell, Sun Hyung Kim, Martin Styner, Jason Wolff, Jed T. Elison, Meghan Swanson, Hongtu Zhu,   Kelly N. Botteron, Louis Collins, John N. Constantino, Stephen R. Dager, Annette M. Estes, Alan C. Evans, Vlad Fonov, Guido Gerig, Penelope Kostopoulos, Robert C. McKinstry, Juhi Pandey, Sarah Paterson, John R. Pruett, Robert T. Schultz, Dennis Shaw, Lonnie Zwaigenbaum, and Joseph Piven for the IBIS Network, "Early brain development in infants at high risk for autism spectrum disorder", Nature 542, 348-351 (16 February 2017) doi:10.1038/nature21369, link
NIH DIRECTOR'S BLOG (Dr. Francis Collins)
 Nature News
BBC News
CBS News
IEEE SPECTRUM
Scientific American
TIME
FORTUNE
  • Eggebrecht AT, Elison JT, Feczko E, Todorov A, Wolff JJ, Kandala S, Adams CM, Snyder AZ, Lewis JD, Estes AM, Zwaigenbaum L, Botteron KN, McKinstry RC, Constantino JN, Evans A, Hazlett HC, Dager S, Paterson SJ, Schultz RT, Styner MA, Gerig G, Das S, Kostopoulos P, Schlaggar BL, Petersen SE, Piven J, Pruett JR Jr; IBIS Network, "Joint Attention and Brain Functional Connectivity in Infants and Toddlers", Cereb Cortex. 2017 Jan 6. doi: 10.1093/cercor/bhw403,  PMID: 28062515, link-ovid, pdf , link
  • Sadeghi, N. and Gilmore, J.H. and Gerig, G., "Twin-Singleton Developmental Study of Brain White Matter Anatomy", Hum Brain Mapp., 38(2), 2017/2/1. doi: 10.1002/hbm.23435., PMID 27739634, link
  • Meghan R. Swanson, Jason J. Wolff, Jed T. Elison, Hongbin Gu, Heather C. Hazlett, Kelly Botteron, Martin Styner, Sarah Paterson, Guido Gerig, John Constantino, Steve Dager, Annette Estes, Clement Vachet, and Joseph Piven. "Splenium Development and Early Spoken Language in Human Infants". Dev Sci. 2017 Mar 20. doi: 10.1111/desc.12360. PMID: 26490257, PMCID: PMC4840090

2017   Peer reviewed full length conference papers

  • Charly Girot, Hiroshi Ishikawa, James Fishbaugh, Gadi Wollstein, Joel Schuman, and Guido Gerig, "Spatiotemporal Analysis of Structural Changes of the Lamina Cribrosa", FIFI/OMIA@MICCAI : 185-193, link
  • James Fishbaugh, Marcel Prastawa, Bo Wang, Patrick Reynolds, Stephen Aylward, and Guido Gerig, "Data-driven rank aggregation with application to grand challenges", MICCAI (2) : 754-762, link
  • Avantika Vardhan, James Fishbaugh, Clement Vachet, and Guido Gerig, "Longitudinal modeling of multi-modal image contrast reveals patterns of early brain growth", MICCAI (1) : 75-83,  link
  • Sungmin Hong, James Fishbaugh, Morteza Rezanejad, Kaleem Siddiqi, Hans Johnson, Jane Paulsen, Eun Young Kim, and Guido Gerig. "Subject-specific longitudinal shape analysis by coupling spatiotemporal shape modeling with medial analysis". In: Proceedings of SPIE Image Processing, SPIE Int Soc Opt Eng., International Society for Optics and Photonics, Paper 10133-46, Feb. 2017, pages 101331A-101331A-7,.   doi: 10.1117/12.2254675,  pdf,

2016    Peer reviewed journal papers

  • Tong Y, Ben Ami T, Hong S, Heintzmann R, Gerig G, Ablonczy Z, Curcio CA, Ach T, Smith RT., HYPERSPECTRAL AUTOFLUORESCENCE IMAGING OF DRUSEN AND RETINAL PIGMENT EPITHELIUM IN DONOR EYES WITH AGE-RELATED MACULAR DEGENERATION, Retina. 2016 Dec;36 Suppl 1:S127-S136. doi: 10.1097/IAE.0000000000001325., PMID: 28005671
  • Gerig, G. and Fishbaugh, J. and Sadeghi, N., Longitudinal Modeling of Appearance and Shape and its Potential for Clinical Use, Med Image Anal. 2016 Oct;33:114-21. doi: 10.1016/j.media.2016.06.014. PMID: 27344938, Elsevier, (link), (pdf)
  • Sun Hyung Kim; Ilwoo Lyu; Vladimir S Fonov; Clement Vachet; Heather  C Hazlett; Rachel  G Smith; Joseph  Piven; Stephen  R Dager; Robert  C McKinstry; John  R Pruett Jr; Alan  C Evans; Louis  D Collins; Kelly  N Botteron; Robert  T Schultz; Guido  Gerig; Martin  A Styner; The IBIS Network, Development of Cortical Shape in the Human Brain from 6 to 24 Months of Age via a Novel Measure of Shape Complexity, Neuroimage. 2016 Jul 15;135:163-76. doi: 10.1016/j.neuroimage.2016.04.053. Epub 2016 May 3. PMID: 27150231 , link,  pdf
  • Bo Wang, Marcel Prastawa; Andrei Irimia; Avishek Saha; Wei Liu; S.Y. Matthew Goh; Paul M Vespa; John D Van Horn; Guido Gerig, Modeling 4D Pathological Changes by Leveraging Normative Models, Computer Vision and Image Understanding Volume 151, October 2016, Pages 3-13, link
  • Conlin CC, Zhang JL, Rousset F, Vachet C, Zhao Y, Morton KA, Carlston K, Gerig G, Lee VS. Performance of an efficient image-registration algorithm in processing MR renography data. J Magn Reson Imaging. 2016 Feb;43(2):391-7. doi: 10.1002/jmri.25000. Epub 2015 Jul 14. PMID: 26174884, PMC4713380, link

2016   Peer reviewed full length conference papers

  • Paul A. Yushkevich, Yang Gao, and Guido Gerig.  Itk-snap:  an  interactive  tool  for semi-automatic  segmentation  of  multi-modality  biomedical  images.   In Proc.  IEEE EMBS, 2016 Aug;2016:3342-3345. doi: 10.1109/EMBC.2016.7591443.  (link),
  • Shireen Elhabian, Clement Vachet, Joseph Piven, Martin Styner and Guido Gerig, Compressive Sensing based Q-space Resampling for handling fast bulk motion in HARDI acquisitions, Proc. IEEE ISBI 2016, 907-910, April 2016, PMID: 25538672, PMC4260507, (link)
  • Yang Gao, Miaomiao Zhang, P. Thomas Fletcher and Guido Gerig, IMAGE REGISTRATION AND SEGMENTATION IN LONGITUDINAL MRI USING TEMPORAL APPEARANCE MODELING, Proc. IEEE ISBI 2016, 629-623, April 2016, (link)
  • Prasanna Muralidharan, James Fishbaugh, Eun Young Kim, Jane Paulsen, Hans Johnson, Guido Gerig and P. Thomas Fletcher, BAYESIAN COVARIATE SELECTION IN MIXED-EFFECTS MODELS FOR LONGITUDINAL SHAPE ANALYSIS, Proc. IEEE ISBI 2016, 656-659, April 2016, PMID: 28090246, PMC5225990, DOI: 10.1109/ISBI.2016.7493352   (link),

2016    Reviewed abstracts and reviewed open access journals

  • Dzenan Zukic, Jared Vicory, Matthew McCormick, Laura EM Wisse, Guido Gerig, Paul Yushkevich, Stephen Aylward, ND morphological contour interpolation, Insight Journal, 09/06/2016, pdf
  • Dzenan Zukic, Matthew McCormick, Guido Gerig, Paul Yushkevich, RLEImage: run-length encoded memory compression scheme for an itk::Image, Insight Journal, 09/06/2016, pdf
  • Tal Ben Ami, Yuehong Tong, Sungmin Hong, Rainer Heintzmann, Guido Gerig, Zsolt Ablonczy, Christine A Curcio, Thomas Ach, Theodore Smith, Hyperspectral Autofluorescence (AF) of Melanin-containing Organelles in Human Retinal Pigment Epithelium (RPE) with Late Age-related Macular Degeneration (AMD), Investigative Ophthalmology & Visual Science, 57(12), pages 1705-1705, 2016/9/26
  • Yuehong Tong, Tal Ben Ami, Sungmin Hong, Rainer Heintzmann, Guido Gerig, Zsolt Ablonczy, Christine A Curcio, Thomas Ach, Theodore Smith, Hyperspectral Autofluorescence Characterization of Transition to Atrophy in Donor Eyes with Advanced Age-Related Macular Degeneration (AMD), Investigative Ophthalmology & Visual Science, 57(12), pages 54-54

2015    Peer reviewed journal papers

  • Sonia Marie Aurore Pujol , William Wells , Carlo Pierpaoli , Caroline Brun , James Gee , Guang Cheng , Baba Vemuri , Olivier Commowick , Sylvain Prima , Aymeric Stamm , Maged Goubran , Ali Khan , Peter Neher , Klaus Maier-Hein , Yundi Shi , Antonio Tristan-Vega , Carl-Fredrik Westin, Gopalkrishna Veni, Ross Whitaker , Martin Styner , Sylvain Gouttard , Isaiah Norton a, Laurent Chauvin , Hatsuho Mamata ,  Guido Gerig , Arya Nabavi , Alexandra Golby and Ron Kikinis, The DTI Challenge: Towards Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery, J Neuroimaging. 2015 Nov;25(6):875-82. doi: 10.1111/jon.12283. PMC4641305
  • Jeffrey S Anderson, Scott M Treiman, Michael A Fergusonand Jared A Nielsen, Jamie O Edgin, Li Dai, Guido Gerig, and Julie R Korenberg. Violence: Heightened brain attentional network response is selectively muted in down syndrome. J Neurodev Disord. 2015;7(1):15. doi: 10.1186/s11689-015-9112-y. Epub 2015 Jun 3. PMCID: PMC4486123
  • Helena J.V. Rutherford, Guido Gerig, Sylvain Gouttard, Marc N. Potenza and Linda C. Mayes, Investigating maternal brain structure and its relationship to substance use and motivational systems, Yale J Biol Med. 2015 Sep 3;88(3):211-7. eCollection 2015 Sep. PMID: 26339203, PMCID: PMC4553640
  • Jason J. Wolff, Guido Gerig, John D. Lewis, Takahiro Soda, Martin A. Styner, Clement Vachet, Kelly N. Botteron, Jed T. Elison, Stephen R. Dager, Annette M. Estes, Heather C. Hazlett, Robert T. Schultz, Lonnie Zwaigenbaum and Joseph Piven for the IBIS Network, "Altered corpus callosum morphology associated with autism over the first two years of life", Brain. 2015 Jul;138(Pt 7):2046-58. doi: 10.1093/brain/awv118. PMC4492413, SPECIAL FEATURE SFARI Simons Foundation  http://sfari.org/news-and-opinion/news/2015/thick-bridge-of-nerves-may-signal-autism-in-infancy
  • Andrew Salzwedel, Karen Grewen, Clement Vachet, Guido Gerig, Weili Lin, and Wei Gao, "Prenatal Drug Exposure Affects Neonatal Brain Functional Connectivity", The Journal of Neuroscience, 35(14): 5860-5869; doi: 10.1523/JNEUROSCI.4333-14.2015,  link, PMID: 25855194, PMCID: PMC4388938
  • John R. Pruett Jr., Sridhar Kandala, Sarah Hoertel, Abraham Z. Snyder, Jed T. Elison, Tomoyuki Nishino, Eric Feczko, Nico U.F. Dosenbach, Binyam Nardos, Jonathan D. Power, Babatunde Adeyemo, Kelly N. Botteron, Robert C. McKinstry, Alan C. Evans, Heather C. Hazlett, Stephen R. Dager, Sarah Paterson, Robert T. Schultz, D. Louis Collins, Vladimir S. Fonov, Martin Styner, Guido Gerig, Samir Das, Penelope Kostopoulos, John N. Constantino, Annette M. Estes, The IBIS Network, Steven E. Petersen, Bradley L. Schlaggar, Joseph Piven, "Accurate age classification of 6 and 12 month-old infants based on resting-state functional connectivity magnetic resonance imaging data", Developmental Cognitive Neuroscience 12 (2015) 123–133,  PMCID: PMC4385423,  doi:10.1016/j.dcn.2015.01.003, pdf

2015   Peer reviewed full length conference papers

  • Kim SH, Fonov V, Collins DL, Gerig G; IBIS Network, Styner MA. Shape index distribution based local surface complexity applied to the human cortex. Proc SPIE Int Soc Opt Eng. 2015;9413. pii: 941344. PMCID: PMC4449152
  • Cherel M, Budin F, Prastawa M, Gerig G, Lee K, Buss C, Lyall A, Consing KZ, Styner M., Automatic Tissue Segmentation of Neonate Brain MR Images with Subject-specific Atlases. Proc SPIE Int Soc Opt Eng. 2015 Feb 21;9413. doi: 10.1117/12.2082209. PMCID: PMC4469197

2015    Reviewed abstracts and reviewed open access journals

  • BA Zielinski, M Db Prigge, AL Alexander, ED Bigler, N Lange, JE Lainhart, G Gerig, Abnormalities in Large-Scale Brain Network Architecture in Autism, Annals of Neurology, WILEY-BLACKWELL, 78, pages S168-S169, Oct 1, 2015, link
  • Neda Sadeghi, Guido Gerig, and John H. Gilmore. Modeling brain growth and development. In Brain Mapping: An Encyclopedic Reference: Volume 1: Acquisition Methods, Methods and Modeling, volume 1, pages 429-436. Feb 2015, link

2014    Peer reviewed journal papers

  • S.Y. Elhabian, Y. Gur, C. Vachet, J. Piven, M.A. Styner, I.R. Leppert, B. Pike, G. Gerig. "Subject-Motion Correction in HARDI Acquisitions: Choices and Consequences," In Frontiers in Neurology - Brain Imaging Methods, 2014, Published online, PMID 25538672 PMC4260507, DOI: 10.3389/fneur.2014.00240
  • Karen Grewen, Margaret Burchinal, Clement Vachet, Sylvain Gouttard, John H Gilmore, Weili Lin, Josephine Johns, Mala Elam, and Guido Gerig. Prenatal Cocaine Effects on Brain Structure in Early Infancy. NeuroImage, 2014. in print, DOI: 10.1016/j.neuroimage.2014.06.070, PMID: 24999039, PMCID: PMC4224027, link
  • Stanley Durrleman, Marcel Prastawa, Nicolas Charon, Julie R Korenberg, Sarang, Joshi, Guido Gerig, and Alain Trouve. Morphometry of anatomical shape complexeswith dense deformations and sparse parameters. Neuroimage, 2014. Volume 101, 1 November 2014, Pages 35–49, doi: 10.1016/j.neuroimage.2014.06.043.,PMC4871626, link
  • Lewis, J. D., A. C. Evans, J. R. Pruett, K. Botteron, L. Zwaigenbaum, A. Estes, G. Gerig, L. Collins, P. Kostopoulos, R. McKinstry, S. Dager, S. Paterson, R. Schultz, M. Styner, H. Hazlett, J. Piven and the IBIS network. "Network inefficiencies in autism spectrum disorder at 24 months." Translational Psychiatry, In Press,  PMCID PMC4035719
  • Ipek Oguz, Mahshid Farzinfar, Joy Matsui, Francois Budin, Zhexing Liu, Guido Gerig, Hans J Johnson, Martin Andreas Styner, DTIPrep: Quality Control of Diffusion-Weighted Images, Frontiers in Neuroinformatics, doi: 10.3389/fninf.2014.00004.PubMed PMID: 24523693 [PubMed] PMCID: PMC3906573 PMC3906573
  • J. Wang, C. Vachet, A. Rumple, S. Gouttard, C. Ouzie, E. Perrot, G. Du, X. Huang, G. Gerig, M.A. Styner. “Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline,” In Frontiers in Neuroinformatics, Vol. 8, No. 7, 2014, PubMed PMID: 24567717; PubMed Central PMCID: PMC3915103.
  • Audrey Rose Verde, Francois Budin, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Mihye Ahn, Hans J Johnson, Joy Matsui, Heather C. Hazlett, Anuja Sharma, Casey Goodlett, Yundi Shi, Sylvain Gouttard, Clement Vachet, Joseph Piven, Hongtu Zhu, Guido Gerig, and Martin Andreas Styner. Unc-Utah Na-mic Framework for Dti Fiber Tract Analysis. Frontiers in Neuroinformatics, 2014. doi 10.3389/fninf.2013.00051. PMID: 24409141 [PubMed] PMCID: PMC3885811 PMC3885811

2014    Peer reviewed full length conference papers

  • S. Elhabian, Y. Gur, C. Vachet, J. Piven, M. Styner, G. Gerig, Motion is Inevitable: The Impact of Motion Correction Schemes on HARDI Reconstructions, MICCAI 2014 CDMRI'14 Workshop, Sept. 2014, PMID/PMC in progress
  • Avantika Vardhan, Neda Sadeghi, Clement Vachet, Joseph Piven, Guido Gerig, Joint longitudinal modeling of brain appearance in multimodal MRI for the characterization of early brain developmental processes, MICCAI 2014 STIA'14 Workshop, Springer LNCS xx, Sept. 2014, PMID/PMC in progress
  • Neda Sadeghi, P. Thomas Fletcher, John H Gilmore, and Guido Gerig. Subject-specific prediction using nonlinear population modeling: Application to early brain maturation from DTI. Med Image Comput Comput Assist Interv. MICCAI 2014;17(Pt 3):33-40. PMID: 25320779, PMCID: PMC4486206
  • Prasanna Muralidharan, James Fishbaugh, Guido Gerig, and P. Thomas Fletcher. Diffeomorphic shape trajectories for improved longitudinal segmentation and statistics, LNCS, Proc. MICCAI. Springer Verlag, Sep 2014. PMID: 25320781, PMCID: PMC4486086.
  • Anuja Sharma, P. Thomas Fletcher, John H. Gilmore, Maria L. Escolar, Aditya Gupta, Martin Styner, Guido Gerig: Parametric regression scheme for distributions: Analysis of DTI fiber tract diffusion changes in early brain development. ISBI 2014: 559-562, PMID: 25356194,  PMC4209698
  • S. Elhabian, Y. Gur, C. Vachet, J. Piven, M. Styner, I. Leppert, G.B. Pike, G. Gerig, “A Preliminary Study on the Effect of Motion Correction On HARDI Reconstruction,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. ISBI 2014: 1055-1058, PMID: 25356195, PMCID: PMC4209744
  • J. Fishbaugh, M. Prastawa, G. Gerig, S. Durrleman. “Geodesic Regression of Image and Shape Data for Improved Modeling of 4D Trajectories,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014, ISBI 2014: 385-388, PMID: 25356192, PMCID: PMC4209724
  • Y. Gao, M. Prastawa, M. Styner, J. Piven, G. Gerig. “A Joint Framework for 4D Segmentation and Estimation of Smooth Temporal Appearance Changes,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. ISBI 2014: 1291-1294, PMID: 25356196, PMCID: PMC4209703
  • A. Sharma, P.T. Fletcher, J.H. Gilmore, M.L. Escolar, A. Gupta, M. Styner, G. Gerig. “Parametric Regression Scheme for Distributions: Analysis of DTI Fiber Tract Diffusion Changes in Early Brain Development,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. ISBI 2014: 559-562, PMID: 25356194, PMCID: PMC4209698
  • Bo Wang, W. Liu, M. Prastawa, A. Irimia, P.M. Vespa, J.D. van Horn, P.T. Fletcher, G. Gerig. “4D Active Cut: An Interactive Tool for Pathological Anatomy Modeling,” In Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI), 2014. ISBI 2014: 529-532, PMID: 25356193, PMCID: PMC4209480
  • Avantika Vardhan, Marcel Prastawa, Clement Vachet, Joseph Piven, and Guido Gerig. Characterizing growth patterns in longitudinal mri using image contrast. In Proc. SPIE 9034, Medical Imaging 2014: Image Processing, 90340D (March 21, 2014); doi:10.1117/12.2043995, PMID: 25309699, PMCID: PMC4193386,  (access)

2014    Reviewed abstracts

  • Shireen Elhabian, Yaniv Gurand Joseph Piven, Martin Styner, Ilana Leppert, G. Bruce Pike, and Guido Gerig. Subject-motion correction in HARDI acquisitions: Choices and consequences. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract #6483
  • Florian Rousset, Clement Vachet, Christopher Conlin, Marta Heilbrun, Jeff L. Zhang, Vivian S. Lee, and Guido Gerig. Semi-automated application for kidney motion correction and filtration analysis in MR renography. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract #4091
  • Neda Sadeghi, John H Gilmore, Weili Lin, and Guido Gerig. Normative modeling of early brain maturation from longitudinal DTI reveals twin-singleton di erences. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract #7869
  • Clement Vachet, Heather C. Hazlett, Joseph Piven, and Guido Gerig. 4D modeling of infant brain growth in Down's syndrome and controls from longitudinal MRI. In Proceedings ISMRM 2014. ISMRM, June 2014. abstract #7532

2013    Peer reviewed journal papers

  • Carissa Cascio, Matthew J. Gribbin, Sylvain Gouttard, Rachel G. Smith, Matthieu Jomier, Samuel H. Field, Michael Graves, Heather C. Hazlett, Keith Muller, , Guido Gerig, and Joseph Piven,"FRACTIONAL ANISOTROPY DISTRIBUTIONS IN 2-6 YEAR-OLD CHILDREN WITH AUTISM", Journal of Intellectual Disability Research J Intellect Disabil Res, Sep 2013, PubMed PMID: 22998325; PubMed Central PMCID: PMC3606640 
  • Jeffrey S. Anderson , Jared A Nielsen, Michael A Ferguson, Melissa C Burback, Elizabeth  T Cox, Li Dai, Guido Gerig, Julie R Korenberg,  Abnormal Brain Synchrony in Down Syndrome, Neuroimage: Clinical, Volume 2, 2013, Pages 703–715, PMID: 24179822 [PubMed] PMCID: PMC3778249 PMC3778249,  doi
  • S. Durrleman, X. Pennec, A. Trouvé, J. Braga, G. Gerig, N. Ayache, Toward a comprehensive framework for the spatiotemporal statistical analysis of longitudinal shape data, Int. Journal Comp. Vision IJCV,   International Journal of Computer Vision 103(1): 22-59 (2013), (doi) , PubMed PMID: 23956495; PubMed Central PMCID: PMC3744347
  • Farzinfar M, Oguz I, Smith RG, Verde AR, Dietrich C, Gupta A, Escolar ML, Piven J, Pujol S, Vachet C, Gouttard S, Gerig G, Dager S, McKinstry RC, Paterson S, Evans AC; The IBIS network, Styner MA, Diffusion imaging quality control via entropy of principal direction distribution. Neuroimage. 2013 May 17;82C:1-12. PMCID: PMC3798052, doi
  • Jed T. Elison, Sarah J. Paterson, Jason J. Wolff, J. Steven Reznick, Noah J. Sasson, Hongbin Gu, Kelly N. Botteron, Stephen R. Dager, Annette M. Estes, Alan C. Evans, Guido Gerig, Heather C. Hazlett, Robert T. Schultz, Martin Styner, Lonnie Zwaigenbaum, and Joseph Piven for the IBIS Network, White Matter Microstructure and Atypical Visual Orienting in 7 Month-Olds at Risk for Autism, Am J Psychiatry 2013;170:899-908. doi:10.1176/appi.ajp.2012.12091150 . PubMed PMID: 23511344; PubMed Central PMCID: PMC3863364
  • Elison JT, Wolff JJ, Heimer DC, Paterson SJ, Gu H, Hazlett HC, Styner M, Gerig G, Piven J; IBIS Network, Frontolimbic neural circuitry at 6 months predicts individual differences in joint attention at 9 months, Dev Sci. 2013 Mar;16(2):186-97. doi: 10.1111/desc.12015. Epub 2012 Dec 20. PubMed PMID: 23432829; PubMed Central PMCID: PMC3582040

  • Neda Sadeghi, Marcel Prastawa; P. Thomas Fletcher; Jason Wolff; John Gilmore; Guido Gerig,  Regional characterization of longitudinal DT-MRI to study white matter maturation of the early developing brain,   2013 Mar;68:236-47,  doi: 10.1016/j.neuroimage.2012.11.040.  PubMed PMID: 23235270; PubMed Central PMCID: PMC3693970

  • Robert K. McClure, Martin Styner, Jeffrey A. Lieberman, Sylvain Gouttard, Guido Gerig, Xiaoyan Shi, and Hongtu Zhu, Localized differences in caudate and hippocampal shape associated with schizophrenia but not antipsychotic type, Psychiatry Res. 2013 Jan 30;211(1):1-10. doi:  10.1016/j.pscychresns.2012.07.001.  PubMed PMID: 23142194; PubMed Central PMCID: PMC3557605

  • Short SJ, Elison JT, Goldman BD, Styner M, Gu H, Connelly M, Maltbie E, Woolson S, Lin W, Gerig G, Reznick JS, Gilmore JH., Neuroimage. 2013 Jan 1;64:156-66. doi: 10.1016/j.neuroimage.2012.09.021. PubMed PMID: 22989623; PubMed Central PMCID: PMC3838303.

  • Kim SH, Fonov V, Dietrich C, Vachet C, Hazlett HC, Smith RG, Graves M, Piven J, Gilmore JH, Collins DL; The IBIS network, Gerig G, Styner M. Adaptive prior probability and spatial temporal intensity change estimation for segmentation of the one-year-old human brain. J Neurosci Methods. 2013 Jan 15;212(1):43-55. doi: 10.1016/j.jneumeth.2012.09.018. PubMed PMID: 23032117; PubMed Centrall PMCID: PMC3513941


2013    Peer reviewed full length conference papers

  • Bo Wang, Marcel Prastawa, Avishek Saha, Suyash Awate, Andrei Irimia, Micah Chambers, Paul Vespa, John Van Horn, Valerio Pascucci, Guido Gerig, Modeling 4D changes in pathological anatomy using domain adaptation: analysis of TBI imaging using a tumor database, in Proc. MICCAI-MBIA 2013 workshop, Lecture Notes in Computer Science, Springer Verlag, MBIA 2013: 31-39, NIHMSID #623298, PMC in progress
  • J. Fishbaugh, M. Prastawa, G. Gerig, S. Durrleman. “Geodesic image regression with a sparse parameterization of diffeomorphisms,” In Proceedings of the Geometric Science of Information Conference (GSI), 2013. GSI 2013: 95-102, PubMed PMID: 24684012; PubMed Central PMCID: PMC4127488,  (PDF)
  • James Fishbaugh, Marcel Prastawa and Guido Gerig, Stanley Durrleman, "Geodesic shape regression in the framework of currents",  IPMI 2013: 718-729, LNCS Springer vol. 7917, June 2013 (PDF) , PMID: 24684012 [PubMed - indexed for MEDLINE] PMCID: PMC4127488 PMC4127488
  • Neda Sadeghi, Marcel Prastawa, P. Thomas Fletcher, John H. Gilmore, Guido Gerig, MULTIVARIATE MODELING OF LONGITUDINAL MRI IN EARLY BRAIN DEVELOPMENT WITH CONFIDENCE MEASURES, ISBI 2013: 1400-1403, PubMed PMID: 23959506; PubMed Central PMCID PMCID: PMC3744330. (PDF)
  • Bo Wang, Marcel Prastawa, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. van Horn, Guido Gerig,  ANALYZING IMAGING BIOMARKERS FOR TRAUMATIC BRAIN INJURY USING 4D MODELING OF LONGITUDINAL MRI, Proc. ISBI 2013: 1392-1395, PMID: 24443697 [PubMed] PMCID: PMC3892715  PMC3892715,  (PDF)
  • Avantika Vardhan, Marcel Prastawa, Joseph Piven for IBIS, Guido Gerig,  MODELING LONGITUDINAL MRI CHANGES IN POPULATIONS USING A LOCALIZED, INFORMATION-THEORETIC MEASURE OF CONTRAST, ISBI 2013: 1396-1399, PubMed PMID: 24443698; PubMed Central PMCID: PMC3892761,    (PDF) 
  • Anuja Sharma P., Thomas Fletcher, John H. Gilmore, Maria L. Escolar, Aditya Gupta, Martin Styner, Guido Gerig,  SPATIOTEMPORAL MODELING OF DISCRETE-TIME DISTRIBUTION-VALUED DATA APPLIED TO DTI TRACT EVOLUTION IN INFANT NEURODEVELOPMENT,  ISBI 2013: 684-687, PubMed PMID: 24443681; PubMed Central  PMCID: PMC3892762,  (PDF)
  • Mahshid Farzinfar, Yinpeng Li, Audrey Verde, Ipek Oguz, Guido Gerig, Martin A. Styner, DTI quality control assessment via error estimation from Monte Carlo simulation, Proc. SPIE 8669, Medical Imaging 2013: Image Processing, 86692C (March 13, 2013); doi:10.1117/12.2006925, (access) , PMID: 23833547 [PubMed] PMCID: PMC3702180 PMC3702180
  • Beatriz Paniagua, Omri Emodi, Jonathan Hill,  James Fishbaugh, Luiz Pimenta, Stephen Aylward, Enquobahrie Andinet, Guido Gerig, John Gilmore, John van Aalst, Martin Styner, 3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants, Proc. SPIE 8672, Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging, 86720V (March 29, 2013); doi:10.1117/12.2006524, (access) (PDF), PMID: 24465118 [PubMed] PMCID: PMC3898845 PMC3898845
  • Audrey R. Verde, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Vicki W. Chanon, Charlotte A. Boettiger, Casey Goodlett, Yundi Shi, Guido Gerig, Sylvain Gouttard, Clement Vachet, Hongtu Zhu, Martin A. Styner, The UNC-Utah NA-MIC DTI framework: atlas based fi ber tract analysis with application to a study of nicotine smoking addiction, Proc SPIE. 2013 Mar 13;8669. doi: 10.1117/12.2007093. (access) ,  PMID: 24386543 [PubMed] PMCID: PMC3877245 PMC3877245

2013    Reviewed abstracts

  • Neda Sadeghi, Clement Vachet, Marcel Prastawa, Julie Korenberg, and Guido Gerig. Analysis of di usion tensor imaging for subjects with down syndrome. In Proc. OHBM. Organization of Human Brain Mapping OHBM, June 2013.
  • Avantika Vardhan, Joseph Piven, Marcel Prastawa, and Guido Gerig. A longitudinal structural MRI study of change in regional contrast in Autism Spectrum Disorder. In Proc. OHBM. Organization of Human Brain Mapping OHBM, June 2013.

2012    Peer reviewed journal papers


o    Dougherty MK, Gu H, Bizzell J, Ramsey S, Gerig G, Perkins DO, Belger A., Differences in subcortical structures in young adolescents at familial risk for schizophrenia: A preliminary study. Psychiatry Res. 2012 Nov 9. doi:pii: S0925-4927(12)00094-7. 10.1016/j.pscychresns.2012.04.016. [Epub ahead of print], PMID: 23146250 [PubMed - indexed for MEDLINE] PMCID: PMC3518556 PMC3518556

o    Andrei Irimia, Bo Wang, Stephen Aylward, Marcel Prastawa, Danielle Pace,  Marc Niethammer, Guido Gerig, David A. Hovda, Ron Kikinis, Paul M. Vespa, John D. Van Horn, Multimodal neuroimaging of structural pathology and neuroconnectivity in traumatic brain injury:  toward personalized outcome prediction, NeuroImage: Clinical, 1, 2012, pp. 1-17, PMID: 24179732 [PubMed]  PMCID: PMC3757727 PMC3757727, (access)  (pdf)

o    X. Geng, S. Gouttard, A. Sharma, H. Gu, M. Styner, W. Lin, G. Gerig, and J. H. Gilmore, “Quantitative Tract-Based White Matter Development from Birth to Age Two Years”, Neuroimage. 2012 Jul 2;61(3):542-57, (http://dx.doi.org/10.1016/j.neuroimage.2012.03.057) , PMID: 22510254 [PubMed - indexed for MEDLINE] PMCID: PMC3358435 PMC3358435

o    Amanda E. Lyall, Sandra Woolson, Honor M. Wolf, Barbara Davis Goldman, J. Steven Reznick, Robert M. Hamer, Weili Lin, Martin Styner, Guido Gerig and John H. Gilmore, Prenatal isolated mild ventriculomegaly is associated with persistent ventricle enlargement at ages 1 and 2, Early Human Development, Elsevier, Early Hum Dev. 2012 Aug;88(8):691-8, (DOI http://dx.doi.org/10.1016/j.earlhumdev.2012.02.003), PMID: 22445211 [PubMed - indexed for MEDLINE] PMCID: PMC3386468 PMC3386468

o    Heather Cody Hazlett, Hongbin Gu, Robert C. McKinstry, Dennis W.W. Shaw, Kelly N. Botteron, Stephen Dager, Martin Styner, Clement Vachet, Guido Gerig, Sarah Paterson, Robert T. Schultz, Annette M. Estes, Alan C. Evans, and Joseph Piven, Brain Volume Findings in Six Month Old Infants at High Familial Risk for Autism, American Journal of Psychiatry (AJP), Am J Psychiatry. 2012 Jun 1;169(6):601-608. PMID: 22684595 [PubMed - indexed for MEDLINE] PMCID: PMC3744332 PMC3744332

o    Jason J. Wolff, Hongbin Gu, Guido Gerig, Jed T. Elison, et al., Differences in White Matter Fiber Tract Development Present from 6 to 24 Months in Infants with Autism,  Am J Psychiatry. 2012 Jun 1;169(6):589-600. doi: 10.1176/appi.ajp.2011.11091447. PMID: 22362397 [PubMed - indexed for MEDLINE] PMCID: PMC3377782 PMC3377782 , http://ajp.psychiatryonline.org/Article.aspx?ArticleID=668180 , Original article pdf

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o    Andrei Irimia, Micah C. Chambers, Carinna M. Torgerson, Maria Filippou, David A. Hovda, Jeffry R. Alger, Guido Gerig, Arthur W. Toga, Paul M. Vespa, Ron Kikinis and John D. Van Horn, Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury, Front Neurol. 2012;3:10. Epub 2012 Feb 6. PMID: 22363313, Free PMC Article, doi: 10.3389/fneur.2012.0001 (http://www.frontiersin.org/neurotrauma/10.3389/fneur.2012.00010/abstract), PMID: 22363313 [PubMed] PMCID: PMC3275792 PMC3275792

2012    Peer reviewed full length conference papers

o    Manasi Datar, Prasanna Muralidharan, Abhishek Kumar, Sylvain Gouttard, Joseph Piven for the IBIS Network, Guido Gerig, Ross Whitaker and P. Thomas Fletcher, "Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data", Lecture Notes in Computer Science LNCS 7570, Springer Verlag, Durrleman, Fletcher, Gerig, Niethammer, edts., pp. 76-87, 2012 (doi), NIHMS #623308, PMC in progress

o    Durrleman S, Prastawa M, Korenberg JR, Joshi S, Trouvé A, Gerig G.,  Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters, Med Image Comput Comput Assist Interv. 2012;15(Pt 3):223-30, PMID: 23286134 [PubMed - indexed for MEDLINE] PMCID: PMC3758250 PMC3758250, (doi)

o    Fishbaugh, J. and Prastawa, M. and Durrleman, S. and Gerig, G., Analysis of Longitudinal Shape Variability via Subject Specific Growth Modeling, Med Image Comput Comput Assist Interv. 2012;15(Pt 1):731-8, PMID: 23285617 [PubMed - indexed for MEDLINE] PMCID: PMC3744241 PMC3744241, (doi)

o    Aditya Gupta, Maria Escolar, Cheryl Dietrich,John Gilmore, Guido Gerig, Martin Styner, 3D Tensor Normalization for Improved Accuracy in DTI Registration Methods,Workshop on Biomedical Image Registration WBIR 2012, 170-179, (Springer link),  PMID XXX

o    Bo Wang, Marcel Prastawa, Suyash P. Awate, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. Van Horn, Guido Gerig, 'Segmentation of Serial MRI of TBI patients using Personalized Atlas Construction and Topological Change Estimation',  In Proceedings of IEEE ISBI 2012, pp. 1152--1155. 2012, PMID: 23999192 [PubMed] PMCID: PMC3758244 PMC3758244, (doi)

o    Neda Sadeghi, Marcel Prastawa, P. Thomas Fletcher, John H. Gilmore, Weili Lin, Guido Gerig, 'STATISTICAL GROWTH MODELING OF LONGITUDINAL DT-MRI FOR REGIONAL CHARACTERIZATION OF EARLY BRAIN DEVELOPMENT', In Proceedings of IEEE ISBI 2012, pp. 1507--1510. 2012, PMID: 23999084 [PubMed] PMCID: PMC3758243 PMC3758243. (doi)

o    Anuja Sharma, Stanley Durrleman, John H. Gilmore, Guido Gerig, 'LONGITUDINAL GROWTH MODELING OF DISCRETE-TIME FUNCTIONS WITH APPLICATION TO DTI TRACT EVOLUTION IN EARLY NEURODEVELOPMENT',  In Proceedings of IEEE ISBI 2012, pp. 1397--1400. 2012. PMID: 24443681 [PubMed] PMCID: PMC3892762 PMC3892762,  (doi)

o    Avantika Vardhan, Marcel Prastawa, Sylvain Gouttard, Joseph Piven, Guido Gerig, 'Quantifying regional growth patterns through longitudinal analysis of distances between multimodal MR intensity distributions',   In Proceedings of IEEE ISBI 2012, pp. 1156--1159. 2012, PMID: 23958630 [PubMed] PMCID: PMC3744339 PMC3744339. (doi)

o    Prastawa, M., Awate, S, Joshi, S., Gerig, G., Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation, Registration, and Atlas Estimation,   In Proceedings of the 2012 IEEE Mathematical Methods in Biomedical Image Analysis (MMBIA) Conference, pp. 49--56. 2012, PMID: 23568185 [PubMed] PMCID: PMC3615562 PMC3615562. (doi)

o    Sylvain Gouttard, Casey B. Goodlett, Marek Kubicki, Guido Gerig, Measures for Validation of DTI Tractography, Proc. SPIE 8314, Medical Imaging 2012: Image Processing, 83140J (February 23, 2012); doi:10.1117/12.911546, PMID: 24353381 [PubMed] PMCID: PMC3864930 PMC3864930 ,  (access)

o    James Fishbaugh, Stanley Durrleman, Guido Gerig, A framework for longitudinal data analysis via shape regression, Proc. SPIE 8314, Medical Imaging 2012: Image Processing, 83143K (February 23, 2012); doi:10.1117/12.911721, PMID: 24392201 [PubMed] PMCID: PMC3877317 PMC3877317,  (access) 

o    Bo Wang, Marcel Prastawa, Andrei Irimia, Micah C. Chambers, Paul M. Vespa, John D. Van Horn, and Guido Gerig, A Patient-Specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury, Proc. SPIE 8314, Medical Imaging 2012: Image Processing, 831402 (February 23, 2012); doi:10.1117/12.911043; (access),  PMID: 24465115 [PubMed] PMCID: PMC3898832 PMC3898832

o   Clement Vachet, Benjamin Yvernault, Kshamta Bhatt, Rachel G. Smith, Guido Gerig, Heather Cody Hazlett, Martin A. Styner, Automatic corpus callosum segmentation using a deformable active Fourier contour model, Proc. SPIE 8317, 831707, March 23, 2012, PMID: 24353382 [PubMed] PMCID: PMC3864934 PMC3864934, (doi)

2011    Peer reviewed journal papers

o   Linh Ha, Marcel Prastawa, Guido Gerig, John Gilmore, Claudio Silva and Sarang Joshi, "Efficient Probabilistic and Geometric Anatomical Mapping using Particle Mesh Approximation on GPUs",  Int J Biomed Imaging. 2011;2011:572187. Epub 2011 Aug 17. PMID 2194152 [PubMed], doi:10.1155/2011/572187

o    Guido Gerig, Ipek Oguz, Sylvain Gouttard, Joohwi Lee, Hongyu An, Weili Lin, Matthew McMurray, Karen Grewen, Josephine Johns, Martin Andreas Styner, Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse, Front Psychiatry. 2011;2:53. Epub 2011 Oct 3., PMID: 22013425 [PubMed] PMCID: PMC3189614 PMC3189614, (http://www.frontiersin.org/child_and_neurodevelopmental_psychiatry_/10.3389/fpsyt.2011.00053/abstract )

o    Irimia A, Chambers MC, Alger JR, Filippou M, Prastawa MW, Wang B, Hovda D, Gerig G, Toga AW, Kikinis R, Vespa PM, Van Horn JD, Comparison of acute and chronic traumatic brain injury using semi-automatic multimodal segmentation of MR volumes, , J Neurotrauma. Nov. 2011, PMID: 21787171 [PubMed - indexed for MEDLINE] PMCID: PMC3218448 PMC3218448

o    Zhu H, Kong L, Li R, Styner M, Gerig G, Lin W, Gilmore JH, FADTTS: functional analysis of diffusion tensor tract statistics, Neuroimage. 2011 Jun 1;56(3):1412-25. Epub 2011 Feb 16, PMID: 21335092 [PubMed - indexed for MEDLINE] PMCID: PMC3085665 PMC3085665

o    Wang Y, Gupta A, Liu Z, Zhang H, Escolar ML, Gilmore JH, Gouttard S, Fillard P, Maltbie E, Gerig G, Styner M, DTI registration in atlas based fiber analysis of infantile Krabbe disease, Neuroimage. 2011 Apr 15;55(4):1577-86. Epub 2011 Jan 19. PMID: 21256236 [PubMed - indexed for MEDLINE] PMCID: PMC3062693 PMC3062693

o    Knickmeyer RC, Kang C, Woolson S, Smith JK, Hamer RM, Lin W, Gerig G, Styner M, Gilmore JH, Twin-singleton differences in neonatal brain structure, Twin Res Hum Genet. 2011 Jun;14(3):268-76, PMID: 21623657 [PubMed - indexed for MEDLINE] PMCID: PMC3145253 PMC3145253

o   Hazlett HC, Poe MD, Gerig G, Styner M, Chappell C, Smith RG, Vachet C, Piven J, Early brain overgrowth in autism associated with an increase in cortical surface area before age 2 years, Arch Gen Psychiatry. 2011 May;68(5):467-76. PMID: 21536976 [PubMed - indexed for MEDLINE] PMCID: PMC3315057 PMC3315057

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o   Shi F, Shen D, Yap PT, Fan Y, Cheng JZ, An H, Wald LL, Gerig G, Gilmore JH, Lin W, CENTS: cortical enhanced neonatal tissue segmentation, Hum Brain Mapp. 2011 Mar;32(3):382-96. doi: 10.1002/hbm.21023. PMID: 20690143 [PubMed - indexed for MEDLINE] PMCID: PMC2976792 PMC2976792

 

2011    Peer reviewed full length conference papers

o    S.H. Kim, V. Fonov, J. Piven, J. Gilmore, C. Vachet, G. Gerig, D.L. Collins, M. Styner. “Spatial Intensity Prior Correction for Tissue Segmentation in the Developing human Brain,” In Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on , vol., no., pp.2049-2052, March 30 2011-April 2 2011, doi: 10.1109/ISBI.2011.5872815, URL, PMID: 23223157 [PubMed] PMCID: PMC3515207 PMC3515207

o    Fishbaugh, J., Durrleman, S.., Gerig, G., Estimation of Smooth Growth Trajectories with Controlled Acceleration from Time Series Shape Data, Med Image Comput Comput Assist Interv. 2011;14(Pt 2):401-8., PMID: 21995054 [PubMed - indexed for MEDLINE] PMCID: PMC3744238 PMC3744238, (doi)

o    Durrleman S, Prastawa M, Gerig G, Joshi S., Optimal data-driven sparse parameterization of diffeomorphisms for population analysis, Inf Process Med Imaging. 2011;22:123-34, PMID: 21761651 [PubMed - indexed for MEDLINE] PMCID: PMC3758258 PMC3758258, (doi)

 

2010    Peer reviewed journal papers

o   John H Gilmore, Chaeryon Kang, Dianne D. Evans, Honor M. Wolfe, J. Keith Smith, Jeffrey A. Lieberman, Weili Lin, Robert M. Hamer, Martin Styner, Guido Gerig, Prenatal and Neonatal Brain Structure and White Matter Maturation in Children at High Risk for Schizophrenia, Am J Psychiatry. 2010 Sep;167(9):1083-91. Epub 2010 Jun 1.PMID: 20516153

o   Gilmore JH, Schmitt JE, Knickmeyer RC, Smith JK, Lin W, Styner M, Gerig G, Neale MC., Genetic and environmental contributions to neonatal brain structure: A twin study, Hum Brain Mapp. 2010 Aug;31(8):1174-82.PMID: 20063301

o   Mohamed El-Sayed, R. Grant Steen, Michele D. Poe, T. Carter Bethea, Guido Gerig, Jeffrey Lieberman, and Linmarie Sikich, Deficits in gray matter volume in psychotic youth with schizophrenia-spectrum disorders are not evident in psychotic youth with mood disorders, J Psychiatry Neurosci. 2010 Jul;35(4):229-36.PMID: 20569649

o    Kevin Gorczowski, Martin Styner, Ja Yeon Jeong, J. S. Marron, Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer, Guido Gerig, "Multi-object Analysis of Volume, Pose, and Shape using Statistical Discrimination," Gorczowski K, Styner M, Jeong JY, Marron JS, Piven J, Hazlett HC, Pizer SM, Gerig G., IEEE Trans Pattern Anal Mach Intell. 2010 Apr;32(4):652-61.PMID: 20224121 <http://doi.ieeecomputersociety.org/10.1109/TPAMI.2009.92>

2010       Peer reviewed full length conference papers

o    N. Sadeghi, M. Prastawa, J. H. Gilmore, W. Lin, and G. Gerig, "Spatio-Temporal Analysis of Early Brain Development," in Proceedings IEEE Asilomar Conference on Signals, Systems & Computers, Nov. 2010, IEEE catalog No.: CFP10431-CDR, ISBN: 978-1-4244-9720-1, Nov. 2010, DOI: 10.1117/12.844526

o    Prastawa, M., Sadeghi, N., Gilmore, J., Lin, W., Gerig, G., A new framework for analyzing white matter maturation in early brain development, In Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 97--100. April, 2010

o    Linh Ha, Marcel Prastawa, Guido Gerig, John H. Gilmore, Claudio Silva, Sarang Joshi, Image Registration Driven by Combined  Probabilistic and Geometric Descriptors, Med Image Comput Comput Assist Interv. 2010;13(Pt 2):602-9.PMID: 20879365

o    Cassian Marc, Clement Vachet, Joseph E. Blocher, Guido Gerig, John H. Gilmore, Martin A. Styner, Changes of MR and DTI appearance in early human brain development, Proc. SPIE 7623, 762324 (2010); http://dx.doi.org/10.1117/12.844912

o    Zhexing Liu, Casey Goodlett, Guido Gerig, Martin Styner, Evaluation of DTI Property Maps as Basis of DTI Atlas Building,  Proc. SPIE 7623, 762325 (2010); http://dx.doi.org/10.1117/12.844911

o    Zhexing Liu, Yi Wang, Guido Gerig, Sylvain Gouttard, Ran Tao, Thomas Fletcher, Martin A. Styner, Quality control of diffusion weighted images, SPIE Medical Imaging, February 2010

o    Neda Sadeghi, Marcel Prastawa, John H. Gilmore, Weili Lin, Guido Gerig, Towards Analysis of Growth Trajectory through Multi-modal Longitudinal MR Imaging, SPIE Medical Imaging, In SPIE Medical Imaging 2010: Image Processing, Vol. 7623, 76232U, Edited by Benoit M. Dawant and David R. Haynor, Proc. SPIE 7623, 76232U (2010); http://dx.doi.org/10.1117/12.844526

2009    Peer reviewed journal papers

o    Heather Cody Hazlett, Michele D. Poe, Amy A. Lightbody, Guido Gerig, James R. MacFall, Allison K. Ross, James Provenzale, Arianna Martin, Allan L. Reiss and Joseph Piven, Teasing apart the heterogeneity of autism: Same behavior, different brains in toddlers with fragile X syndrome and autism, Journal of Neurodevelopmental Disorders, Springer Verlag, Volume 1, Issue 1 (2009), Page 81

o    Prastawa M, Bullitt E, Gerig G, Simulation of brain tumors in MR images, Medical Image Analysis 13 (2009), pp. 297-311, PMID: 19119055

o    Matthew W. Mosconi, Heather Cody Hazlett, Michele D. Poe, Guido Gerig, Rachel Gimpel Smith, and Joseph Piven, A longitudinal study of amygdala volume and joint attention in 2-4 year old children with autism, Arch Gen Psychiatry. 2009 May;66(5):509-16. PMID: 19414710

o    Casey B. Goodlett, P. Thomas Fletcher, John H. Gilmore, and Guido Gerig, Group Analysis of DTI Fiber Tract Statistics with Application to Neurodevelopment, NeuroImage 45 (1) Supp. 1, 2009.p. S133-S142, PMID: 19059345

o    W. Gao, W. Lin, Y. Chen, G. Gerig, J.K. Smith, V. Jewells and J.H. Gilmore, Temporal and Spatial Development of Axonal Maturation and Myelination of White Matter in the Developing Brain, American Journal of Neuroradiology (AJNR) 30:290-296, February 2009

o    Niyati Mukherjee, Chaeryon Kang, Honor M. Wolfe, Barbara S. Hertzberg,  J. Keith Smith, Weili Lin, Guido Gerig, Robert M. Hamer, John H. Gilmore,  Discordance of Prenatal and Neonatal Brain Development in Twins, Early Hum Dev. 2009 Mar;85(3):171-5, PMID: 18804925

o    Fan Zhang, Edwin R. Hancock, Casey Goodlett and Guido Gerig, Probabilistic White Matter Fiber Tracking using, Particle Filtering and von Mises-Fisher Sampling, Med Image Anal. 2009 Feb;13(1):5-18, PMID: 18602332

2009        Peer reviewed full length conference papers

o    Sylvain Gouttard, Marcel Prastawa, Elizabeth Bullitt, Casey Goodlett and Guido Gerig, Constrained Data Decomposition and Regression for Analyzing Healthy Aging from Fiber Tract Diffusion Properties, to appear Proc. MICCAI 2009, Springer Verlag (selected as oral, 5.5% acc. rate, overall 32%).

o    Manasi Datar, Joshua Cates, P. Thomas Fletcher, Sylvain Gouttard, Guido Gerig and Ross Whitaker, Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging, to appear Proc. MICCAI 2009, Springer Verlag (32% acceptance rate)

o    Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets, Stanley Durrleman, Xavier Pennec, A. Trouve, Guido Gerig, Nicholas Ayache, to appear Proc. MICCAI 2009, Springer Verlag (selected as oral, 5.5% acc. rate, overall 32%).

o    Dingang Shen, Guido Gerig, Weili Lin, Cortical Enhanced Tissue Segmentation of Neonatal Brain MR Images Acquired by Dedicated Phased Array Coil, IEEE CVPR-MMBIA workshop June 2009

o    Zhexing Liu, Hongtu Zhu, Bonita L. Marks, Laurence M. Katz, Casey B. Goodlett, Guido Gerig, Martin Styner, Voxel-wise group analysis of DTI, to appear IEEE proceedings ISBI 2009 (selected as oral, 10% acceptance rate, overall 50%)

2008 Peer reviewed journal papers

o    John H. Gilmore, MD; Lauren Smith, BA, Honor Wolfe, MD; Barbara Hertzberg, MD; J. Keith Smith, MD; Nancy Chescheir; Dianne Evans, Chaeryon Kang; Robert M. Hamer, Weili Lin, Guido Gerig, Prenatal Mild Ventriculomegaly Predicts Abnormal Development of the Neonatal Brain, Biol Psychiatry, 2008 Dec 15;64(12):1069-76, PMID: 18835482.

o    Rebecca C. Knickmeyer, Sylvain Gouttard, Chaeryon Kang, Dianne Evans, Kathy Wilber, Keith J. Smith, Robert M. Hamer, Weili Lin, Guido Gerig, John H. Gilmore, A Structural MRI Study of Human Brain Development from Birth to Two Years, J Neurosci. 2008 Nov 19;28(47):12176-82, PMID: 19020011.

o    Kubicki M, Styner M, Bouix S, Gerig G, Markant D, Smith K, Kikinis R, McCarley RW, Shenton ME. Reduced Interhemispheric Connectivity in Schizophrenia- Tractography Based Segmentation of the Corpus Callosum. /Schizophr Res/ Dec 2008;106(2-3):125-131.

o    W. Lin, Q. Zhu, W. Gao, Y. Chen, C.-H. Toh, M. Styner, G. Gerig, J.K. Smith, B. Biswal and J.H. Gilmore, Functional Connectivity MR Imaging Reveals Cortical Functional Connectivity in the Developing Brain, American Journal of Neuroradiology (AJNR) 29:1883-1889, November-December 2008

o    Belmonte MK, Mazziotta JC, Minshew NJ, Evans AC, Courchesne E, Dager SR, Bookheimer SY, Aylward EH, Amaral DG, Cantor RM, Chugani DC, Dale AM, Davatzikos C, Gerig G, Herbert MR, Lainhart JE, Murphy DG, Piven J, Reiss AL, Schultz RT, Zeffiro TA, Levi-Pearl, Offering to Share: How to Put Heads Together in Autism Neuroimaging. J Autism Dev Disord. 2008 Jan;38(1):2-13, PMID: 17347882

2008 Peer reviewed full length conference papers

o    A.Fedorov, E.Billet, M.Prastawa, G.Gerig, A.Radmanesh, S.K.Warfield, R.Kikinis, and N.Chrisochoides, Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures, accepted as oral presentation at ISVC08 (4th Int. Symp. On Visual Computing), to appear Springer LNCS Fall 2008

o    Marcel Prastawa and Guido Gerig, Brain Lesion Segmentation through Physical Model Estimation, accepted as oral presentation at ISVC08 (4th Int. Symp. On Visual Computing), to appear Springer LNCS Fall 2008

o    Casey Goodlett, P. Thomas Fletcher, John Gilmore, and Guido Gerig, Group Statistics of DTI Fiber Bundles Using Spatial Functions of Tensor Measures, Proc. MICCAI’08, Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. 5241, Sept. 2008, pp. 1068 -- 1073, nominated best paper award

o    Sylvain Gouttard, Martin Styner, Marcel Prastawa, Joseph Piven, and Guido Gerig, Assessment of Reliability of Multi-site Neuroimaging via Traveling Phantom Study, Proc. MICCAI’08, Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. 5242, Sept. 2008, pp. 263 -- 270

o    Shun Xu, Martin Styner, and Guido Gerig, “Multivariate Nonlinear Mixed Model to Analyze Longitudinal Image Data: MRI Study of Early Brain Development”, Proc. of IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA) 2008, June 2008

o    Styner, M., Oguz, I., Heimann, T., Gerig, G., Minimum description length with local geometry, Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on 14-17 May 2008 Page(s): 1283 - 1286 Digital Object Identifier 10.1109/ISBI.2008.4541238

o    Xu, Shun C. A. Styner, Martin, Gilmore, John H. Gerig, Guido, Multivariate longitudinal statistics for neonatal-pediatric brain tissue development,  Proc. SPIE 6914, 69140C (2008); http://dx.doi.org/10.1117/12.773966

 

2007 Peer reviewed journal papers

o    J. H. Gilmore, W. Lin, I. Corouge, Y. S. K. Vetsa, J. K.Smith, Ch. Kang, H. Gu, R.M. Hamer, J. A. Lieberman, G. Gerig, Early Postnatal Development of Corpus Callosum and Corticospinal White Matter Assessed with Quantitative Tractography,  AJNR Am J Neuroradiol. 2007 Oct;28(9):1789-95

o    Huang X, Lee YZ, McKeown M, Gerig G, Gu H, Lin W, Lewis MM, Ford S, Troster AI, Weinberger DR, Styner , Asymmetrical ventricular enlargement in Parkinson's disease. Mov Disord 2007 Aug 15;22(11):1657-60

o    Belmonte MK, Mazziotta JC, Minshew NJ, Evans AC, Courchesne E, Dager SR, Bookheimer SY, Aylward EH, Amaral DG, Cantor RM, Chugani DC, Dale AM, Davatzikos C, Gerig G, Herbert MR, Lainhart JE, Murphy DG, Piven J, Reiss AL, Schultz RT, Zeffiro TA, Levi-Pearl, Offering to Share: How to Put Heads Together in Autism Neuroimaging. J Autism Dev Disord 2007 Mar 9;():

o    Taylor WD, MacFall JR, Gerig G, Krishnan KR. Structural integrity of the uncinate fasciculus in geriatric depression: Relationship with age of onset. Neuropsychiatric Disease and Treatment 2007; 3(5):669-674

o    Carissa J. Cascio, Guido Gerig and Joseph Piven, Diffusion Tensor Imaging: Application to the Study of the Developing Brain, J Am Acad Child Adolesc Psychiatry. 2007 Feb;46(2):213-23

o    Gilmore JH, Lin W, Prastawa MW, Looney CB, Vetsa YSK, Knickmeyer RC, Evans DD, Smith JK, Hamer RM, Lieberman JA, Gerig G. Regional gray matter growth, sexual dimorphism, and cerebral asymmetry in the neonatal brain. Journal of Neuroscience 2007;27(6):1255-1260. Acrobat Reader format [1106kb]
Original Artible Journal of Neuroscience
Special Feature J Neuroscience
Medical News Today
UNC News Feb 7, 2007
UNC School of Public Health

 

2007 Peer reviewed full length conference papers

o    Goodlett, Casey , Fletcher, P. Thomas , Lin, Weili , and Gerig, Guido, "Quantification of measurement error in DTI: Theoretical predictions and validation", Proc. MICCAI’07, Springer LNCS 4792, Nov. 2007, pp. 10-17

o    Fan Fan Zhang, Casey Goodlett, Edwin Hancock, Guido Gerig, "Probabilistic White Matter Fiber Tracking using Particle Filtering", accepted CVPR workshop EMMCVPR 2007

o    Fan Zhang et al., Probabilistic White Matter Fiber Tracking using Particle Filtering, Proc. MICCAI 2007, Springer LNCS 4791, Nov. 2007, pp. 144-151

o    Terriberry, Timothy B., Damon, James N., Pizer, Stephen M., Joshi, Sarang C. and Gerig, Guido, "Population-based Fitting of Medial Shape Models with Correspondence Optimization", in Proceedings IPMI'07, Information Processing in Med Imaging, Springer LNCS, 2007;20():700-12

o    Kevin Gorczowski, Martin Styner, Ja Yeon Jeong, J. S. Marron, Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer, Guido Gerig, Statistical Shape Analysis of Multi-Object Complexes, Proc. CVPR’07, IEEE Press

o    C. B. Goodlett, P. T. Fletcher, W. Lin, and G. Gerig, Noise-induced bias in low-direction diffusion tensor MRI: Replication of Monte-Carlo simulation with in-vivo scans, short paper Proc. ISMRM 2007

o    D Nain, M Styner, M Niethammer, J J Levitt, M E Shenton, G Gerig, A Bobick, A Tannenbaum, Statistical shape analysis of brain structures using spherical wavelets, Proc. ISBI 2007, IEEE press

o    Martin Styner, Shun Xu, Mohammed El-Sayed, Guido Gerig, Correspondence Evaluation in local shape analysis and structural subdivision, Proc. ISBI 2007, IEEE press

o    Kevin Gorczowski, Martin Stynera, Ja Yeon Jeonga, J. S. Marron, Joseph Piven, Heather Cody, Hazlett, Stephen M. Pizer, Guido Gerig, Discrimination Analysis using Multi-object Statistics of Shape and Pose, Proc. SPIE 6512, 65121A (2007); http://dx.doi.org/10.1117/12.710218

o    Sylvain Gouttard, Martin Styner, Sarang Joshi, Rachel G. Smith, Heather Cody, Guido Gerig, Subcortical structure segmentation using probabilistic atlas prior, Proc. SPIE 6512, 65122J (2007); http://dx.doi.org/10.1117/12.708626

o    M. Styner, I. Oguz, S. Xu, D. Pantazis, and G. Gerig. Statistical group differences in anatomical shape analysis using hotelling T2 metric. Proc. SPIE 6512, 65123Z (2007); http://dx.doi.org/10.1117/12.708467

2006 Peer reviewed journal papers

o    John H. Gilmore, Weili Lin, and Guido Gerig, IMAGES IN NEUROSCIENCE: Fetal and Neonatal Brain Development, Am J Psychiatry, Dec 2006; 163: 2046. Acrobat Reader format [132kb]

o    Carissa J. Cascio, Martin Styner, Rachel G. Smith, Michele D. Poe, Guido Gerig, Heather C. Hazlett, Matthieu Jomier, Roland Bammer, and Joseph Piven, Tractography-based segmentation of the corpus callosum reveals a reduced relationship to cortical white matter volume in young children with developmental delay, Am J Psychiatry, Dec 2006; 163: 2157 - 2163 Acrobat Reader format [199Kb]

o    Carissa J. Cascio, Guido Gerig and Joseph Piven, Diffusion Tensor Imaging: Application to the Study of the Developing Brain, in print Journal of the American Academy of Child and Adolescent Psychiatry JAACAP, August 2006 Acrobat Reader format [970kb]

o    Isabelle Corouge, P.Thomas Fletcher, Sarang Joshi, Sylvain Gouttard, Guido Gerig, Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Medical Image Analysis 10 (2006), 786 - 798 Acrobat Reader format [914kb]
PubMed Entry

o    Yushkevich, PA, Piven, J., Cody Hazlett, H., Gimpel Smith, R., Ho, S, Gee, J.J.Gerig, G.; User-Guided 3D Active Contour Segmentation of Anatomical Structures: Significantly Improved Efficiency and Reliability, NeuroImage 31 (2006) 1116 - 1128 Acrobat Reader format [983Kb]
PubMed Entry
Link to Elsevier Direct

o    Heather Cody Hazlett, Michele D. Poe, Guido Gerig, Rachel Gimpel Smith and Joseph Piven, Cortical Gray and White Brain Tissue Volume in Adolescents and Adults with Autism, Biological Psychiatry, Volume 59, Issue 1, Pages 1-96 (1 January 2006) Acrobat Reader format [1.5Mb]
PubMed Entry

o    Peter Lorenzen, Marcel Prastawa, Brad Davis, Guido Gerig, Elizabeth Bullitt, and Sarang Joshi, Multi-Modal Image Set Registration and Atlas Formation, Medical Image Analysis MEDIA, Elsevier, Vol 10 issue 3, pp 440-451, May 2006 Acrobat Reader format [600Kb]
PubMed Entry

2006 Peer reviewed full length conference papers

o    Oguz, Ipek, Gerig, Guido, Barre, Sebastien, Styner, Martin, A Quantitative KWMeshVisu: A Mesh Visualization Tool for Shape Analysis, 2006, ISC/NA-MIC Workshop on Open Science at MICCAI 2006, Online publication: http://hdl.handle.net/1926/220

o    Styner, M. and Oguz, I. and Xu, S. and Brechbuhler, C. and Pantazis, D. and Levitt, J. and Shenton, M. and Gerig, G.:Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM, Open Science Workshop at MICCAI 2006, Kopenhagen, published at Insight Journal DSpace link: http://hdl.handle.net/1926/215

o    Martin Styner, Kevin Gorczowski, Tom Fletcher, Ja Yeon Jeong, Stephen M. Pizer, Guido Gerig, Multi-Object Statistics using Principal Geodesic Analysis in a Longitudinal Pediatric Study, Lecture Notes in Computer Science LNCS No. 4091, G-Z Yang, T. Jiang, D. Shen, L. Gu and J. Yang, editors, Springer Verlag, Proc. MIAR conference, pp. 1 - 8, August 2006 Acrobat Reader format [807Kb]

o    Timothy B. Terriberry and Guido Gerig, A Continuous 3-D Medial Shape Model With Branching, International Workshop on Mathematical Foundations of Computational Anatomy MFCA-2006, in conjunction with MICCAI 2006 MFCA-2006
Acrobat Reader format [807Kb]

o    Improved Correspondence for DTI Population Studies via Unbiased Atlas Building Casey Goodlett, Brad Davis, Remi Jean, John Gilmore, and Guido Gerig, Lecture Notes in Computer Science LNCS, Medical Image Computing and Computer-Assisted Intervention, Springer Verlag, Vol. 4191, Oct. 2006, pp. 260 - 267 Acrobat Reader format [1.17Mb]

o    Computational Anatomy to Assess Longitudinal Trajectory of Brain Growth, G. Gerig, B. Davis, P. Lorenzen, Sh. Xu, M. Jomier, J. Piven and S. Joshi, to appear Proc. 3DPVT, June 2006 Acrobat Reader format [1.78Mb]

o    Shun Xu, Martin Styner, Brad Davis, Sarang Joshi, Guido Gerig, Group Mean Differences of Voxel and Surface Objects via Nonlinear Averaging, in IEEE International Symposium on Biomedical Imaging (ISBI), pp. 758-761, Apr. 2006 Acrobat Reader format [416Kb]

o    Guido Gerig, Sarang Joshi, Tom Fletcher, Kevin Gorczowski, Shun Xu, Stephen M. Pizer, Martin Styner, "Statistics of populations of images and its embedded objects: Driving applications in neuroimaging", in IEEE International Symposium on Biomedical Imaging (ISBI), special session Shape in Imaging, pp. 1120-1123, Apr. 2006 Acrobat Reader format [1.19Mb]

o    Martin Styner, Matthieu Jomier, and Guido Gerig, Closed and open source neuroimage analysis tools and libraries at UNC, in IEEE International Symposium on Biomedical Imaging (ISBI), special session Open Source, pp. 702-705, Apr. 2006. Acrobat Reader format [188Kb]

2005 Peer reviewed journal papers

o    Matthew J. Hoptman, Jan Volavka, Elisabeth M. Weiss, Pál Czobor, Philip R. Szeszko, Guido Gerig, Miranda Chakos, Joseph Blocher, Leslie L. Citrome , Jean-Pierre Lindenmayer, Brian Sheitman, Jeffrey A. Lieberman and Robert M. Bilder, Quantitative MRI Measures of Orbitofrontal Cortex in Patients with Chronic Schizophrenia or Schizoaffective Disorder in print Psychiatry Research, Neuroimaging

o    Amy Pinkham, David Penn, Bethany Wangelin, Diana Perkins, Guido Gerig, Hongbin Gu, and Jeffrey Lieberman, Facial Emotion Perception and Fusiform Gyrus Volume in First Episode Schizophrenia, Schizophrenia Research, in print

o    Marcel Prastawa, John H. Gilmore, Weili Lin, Guido Gerig, Automatic Segmentation of MR Images of the Developing Newborn Brain, Medical Image Analysis (MedIA). Vol 9, October 2005, pages 457-466 Acrobat Reader format [800Kb]
Link to Elsevier Direct

o    Hazlett, Heather Cody, Poe, Michele, Gerig, Guido, Smith, Rachel, Provenzale, Jim, Ross, Allison, Gilmore, John H. and Piven, Joseph, Magnetic Resonance Imaging and Head Circumference Study of Brain Size in Autism, Birth Through Age 2 Years, Arch Gen Psychiatry. 2005;62:1366-1376 Acrobat Reader format [800Kb]

o    Elizabeth Bullitt, Donglin Zeng, Guido Gerig, Stephen Aylward, Sarang Joshi, J. Keith Smith, Weili Lin, Matthew G. Ewend, Vessel Tortuosity and Brain Tumor Malignancy: A Blinded Study, Academic Radiology, 12:1232-1240, 2005 Abstract/Full Text

o    Martin Styner, Jeffrey A. Lieberman, Robert McClure, Daniel Weinberger, Douglas Jones, Guido Gerig, Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors (in print Proc. National Academy of Science PNAS, Feb. 2005) Acrobat Reader format [611Kb] // PNAS Abstract News reports about this paper: Lichtblicke (German) Bild der Wissenschaft (German)

2005 Peer reviewed full length conference papers

o    Yushkevich Paul A., Piven Joseph, Cody Heather, Ho Sean, Gee James C., Gerig Guido, User-Guided Level Set Segmentation of Anatomical Structures with ITK-SNAP, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: Download

o    C. Goodlett, I. Corouge, M. Jomier, and G. Gerig, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: Download

o    Corouge, I., Fletcher, T., Joshi, S., Gilmore J.H., and Gerig, G., Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 131 -- 138 Acrobat Reader format

o    Prastawa, M., Bullitt, E. and Gerig, G., Synthetic Ground Truth for Validation of Brain Tumor MRI Segmentation, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 26 -- 33 Acrobat Reader format

o    Mortamet, B., Donglin, Z., Gerig, G., Prastawa, M. and Bullitt, E., Effects of healthy aging measured by intracranial compartment volumes using designed MR brain database, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 383 -- 391 Acrobat Reader format

o    Terriberry, T., Joshi S., and Gerig, G., Hypothesis Testing with Nonlinear Shape Models, Lecture Notes in Computer Science LNCS, Gary E. Christensen and Milan Sonka, editors, Springer Verlag, Vol. 3565, July. 2005, pp. 15 -- 26 Acrobat Reader format

2004 Peer reviewed journal papers

o    Elizabeth Bullitt, Matthew G. Ewend, Stephen Aylward, Weili Lin, Guido Gerig, Sarang Joshi, Inkyung Jung, Keith Muller, Keith Smith, Abnormal vessel tortuosity as a marker of treatment response of malignant gliomas: Preliminary report Technology in Cancer Research and Treatment TCRT, Volume 3 No. 6 (p 525-670) Dec 2004

o    MH Chakos, SA Schobel, H Gu, G Gerig, D Bradford, C Charles, and J Lieberman, "Duration of illness and treatment effects on hippocampal volume in male patients with schizophrenia," British Journal of Psychiatry, vol. 186, no. , pp. 26-31, 2005. Acrobat Reader format [168Kb]

o    Sarang Joshi, Brad Davis, Matthieu Jomier, and Guido Gerig, "Unbiased Diffeomorphic Atlas Construction for Computational Anatomy," NeuroImage; Supplement issue on Mathematics in Brain Imaging, (PM Thompson, MI Miller, T Ratnanather, RA Poldrack, and TE Nichols, eds.), vol. 23, no. Supplement1, pp. S151-S160, Elsevier, Inc, 2004. Acrobat Reader format [800Kb]

o    John H. Gilmore, Guihua Zhai, Kathy Wilber, J. Keith Smith, Weili Lin, and Guido Gerig, "3 Tesla magnetic resonance imaging of the brain in newborns," Psychiatric Research Neuroimaging, vol. 132, no. , pp. 81-85, Elsevier, 2004. Acrobat Reader format [190Kb]

o    Martin Styner, Jeffrey A. Lieberman, Dimitrios Pantazis and Guido Gerig, "Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia", Medical Image Analysis MEDIA, Elsevier, Edited by R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 197-203 Acrobat Reader format [840Kb]

o    Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "A Brain Tumor Segmentation Framework Based On Outlier Detection", Medical Image Analysis MEDIA, Elsevier, Edited by R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 275-283 Acrobat Reader format [840Kb]

o    Cevidanes, L.H.S., Franco, A.A., Gerig, G., Proffit, W.R., Slice, D.E., Enlow, D.H., et al (2005). Comparison of relative mandibular growth vectors with high-resolution 3-dimensional imaging.Am J Orthod Dentofacial Orthop, 128:27-34.

o    Cevidanes, L.H.S., Franco, A.A., Gerig, G., Proffit, W.R., Slice, D.E., Enlow, D.H., et al (2005). Assessment of mandibular growth and response to orthopedic therapy with 3-dimensional magnetic resonance images. Am J Orthod Dentofacial Orthop, 128:16-26.

2004 Peer reviewed full length conference papers

o    Guido Gerig, Sylvain Gouttard, and Isabelle Corouge, "Analysis of Brain White Matter via Fiber Tract Modeling", IEEE Engineering in Medicine and Biology EMB 2004: Abstract p. 426, full paper IEEE Catalog No: 04CH37558C, ISBN: 0-7803-8440-7 Acrobat Reader format [4.2Mb]

o    Isabelle Corouge, Sylvain Gouttard, and Guido Gerig, "A Statistical Shape Model of Individual Fiber Tracts Extracted from Diffusion Tensor MRI", Lecture Notes in Computer Science LNCS 3217, Springer Verlag, pp. 671-679, 2004 Acrobat Reader format [2.7Mb]

o    Marcel Prastawa, John Gilmore, Weili Lin, and Guido Gerig, "Automatic Segmentation of Neonatal Brain MRI", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 10-17, 2004 Acrobat Reader format [300Kb]

o    Sean Ho, Guido Gerig, "Profile Scale-spaces for Multiscale Image Match", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 176-183, 2004 Acrobat Reader format [310Kb]

o    Peter Lorenzen, Brad Davis, Guido Gerig, Elizabeth Bullitt and Sarang Joshi, "Multi-class Posterior Atlas Formation via Unbiased Kullback-Leibler Template Estimation", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 95-102, 2004 Acrobat Reader format [270Kb]

o    Elizabeth Bullitt, Inkyung Jung, Keith Muller, Guido Gerig, Stephen Aylward, Sarang Joshi, Keith Smith, Matthew Ewend, "Determining Malignancy of Brain Tumors By Analysis of Vessel Shape", Lecture Notes in Computer Science LNCS 3217, Springer Verlag, pp. 645-653, 2004 Acrobat Reader format [320Kb]

o    Corouge, Isabelle, Gouttard, Sylvain and Gerig, Guido, "Towards a Shape Model of White Matter Fiber Bundles using Diffusion Tensor MRI" , International Symposium on Biomedical Imaging (ISBI'04), (Piscataway, NJ), pp. 344-347, April 2004 Acrobat Reader format [0.75Mb]

o    Martin Styner and Guido Gerig, "Shape Analysis of Anatomical Structures corrected for Multiple Correlated Statistical Tests", Proc. of SPIE, Medical Imaging 2004: Image Processing, Milan Sonka,J. Michael Fitzpatrick, Eds., Vol. #5370, pp. 233-240, Proc. SPIE 5370, 233 (2004); http://dx.doi.org/10.1117/12.533026, Feb. 2004 Acrobat Reader format [400Kb] Abstract w. full reference

2003 Peer reviewed journal papers

o    Prastawa, Marcel, and Moon, Nathan, and Bullitt, Elizabeth, and van Leemput, Koen and Gerig, Guido, Automatic Brain and Tumor Segmentation, Academic Radiology, Vol. 10 pp. 1341-1348 Dec. 2003 Acrobat Reader format [320Kb]

o    Bullitt, Elizabeth, and Gerig, Guido, and Pizer, Stephen M., and Lin, Weili and Aylward, Stephen R. Automatic Measuring Tortuosity of the Intracerebral Vasculature from MRA Images, IEEE Transactions on Medical Imaging TMI, Vol 22, No 9, Sept. 2003, pp. 1163-1171

o    Stephen M. Pizer, Guido Gerig, Sarang Joshi, Stephen R. Aylward, Multiscale Medial Shape-Based Analysis of Image Objects, Proceedings of the IEEE, Special Isasue on: Emerging Medical Imaging Technology, Vol. 91, No. 10, pp. 1670-1679, October 2003 Acrobat Reader format [730Kb]

o    Guihuao Zhai, Weili Lin, Kathy Wilber, Guido Gerig, and John Gilmore, "Comparison of Regional White Matter Diffusion in Healthy Neonate and Adults Using a 3T Head-only MR Scanner", Radiology:229, 2003, pp. 673-681 Acrobat Reader format [330Kb]

o    M. Styner, G. Gerig, Steve Pizer, Sarang Joshi, "Automatic and Robust Computation of 3D Medial Models Incorporating Object Variability", International Journal of Computer Vision (IJCV), O. Faugeras, K. Ikeuchi, and J. Ponce, eds., Vol. 55, No. 2/3, Nov/Dec 2003, pp. 107-122 Acrobat Reader format [330Kb]

o    M. Styner, G. Gerig, J. Lieberman, D. Jones, D. Weinberger, "Statistical shape analysis of neuroanatomical structures based on medial models". Medical Image Analysis (MEDIA, Elsevier), Vol. 7 No. 3, Sept. 2003, pp. 207-220 Acrobat Reader format [6Mb]

o    S. Joshi, P. Lorenzen, G. Gerig, and E. Bullitt, "Structural and Radiometric Asymmetry in Brain Images", Medical Image Analysis Journal, Volume 7, Issue 2, Pages 155-170, Elsevier Science, June 2003.

2003 Peer reviewed full length conference papers

o    Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "Robust Estimation for Brain Tumor Segmentation", Lecture Notes in Computer Science LNCS #2879, pp. 530-537, Nov. 2003 Acrobat Reader format [465Kb]

o    Pierre Fillard, John Gilmore, Weili Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths", Lecture Notes in Computer Science LNCS #2879, pp. 16-23, Nov. 2003 Acrobat Reader format [525Kb] MICCAI'03 Award: Best Student Paper Image Processing and Visualization

o    Guido Gerig, Keith E. Muller, Emily O. Kistner, Yueh-Yun Chi, Miranda Chakos, Martin Styner, Jeffrey A. Lieberman, "Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method", Lecture Notes in Computer Science LNCS #2879, pp. 653-660, Nov. 2003 Acrobat Reader format [525Kb]

o    Martin Styner, Jeffrey A. Lieberman, and Guido Gerig, "Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia", Lecture Notes in Computer Science LNCS #2879, pp. 464-471, Nov. 2003 Acrobat Reader format [525Kb]

o    Y. Sampath K. Vetsa, Martin Styner, Stephen M. Pizer, Jeffrey A. Lieberman, Guido Gerig, "Caudate shape discrimination in schizophrenia using template-free nonparametric tests", Lecture Notes in Computer Science LNCS #2879, pp. 671-679, Nov. 2003 Acrobat Reader format [300Kb]

o    Elizabeth Bullitt, Guido Gerig, Stephen Aylward, Sarang Joshi, Keith Smith, Matthew Ewend, and Weili Lin, "Vascular Attributes and Malignant Brain Tumors", Lecture Notes in Computer Science LNCS #2878, pp. 661-669, Nov. 2003 Acrobat Reader format [216Kb]

o    Pierre Fillard and Guido Gerig, "Analysis Tool For Diffusion Tensor MRI", SHORT PAPER, Lecture Notes in Computer Science LNCS #2879, pp. 967-968, Nov. 2003 Acrobat Reader format [653Kb]

o    Guido Gerig, Marcel Prastawa, Weili Lin and John Gilmore, "Assessing Early Brain Development in Neonates by Segmentation of High-Resolution 3T MRI", SHORT PAPER, Lecture Notes in Computer Science LNCS #2879, pp. 979-980, Nov. 2003 Acrobat Reader format [410Kb]

o    Sean Ho and Guido Gerig, "Scale-Space on Image Profiles About an Object Boundary", in Scale Space, Lecture Notes in Computer Science LNCS-2695, pp. 564-575, Springer, July 2003 Acrobat Reader format [785Kb]

2002 Peer reviewed journal papers

o    Pizer, Stephen M. and Fletcher, Thomas and Thall, Andrew and Styner, Martin and Gerig, Guido and Joshi, Sarang, Object Models in Multiscale Intrinsic Coordinates via M-reps, image and vision computing "ivc", Vol. 21, Nr. 1, pp. 5-15, Jan. 2002 Acrobat Reader format [600Kb]

o    M.E. Shenton, G. Gerig, R.W. McCarley, G. Szekely, R. Kikinis. "Amygdala-Hippocampus Shape Differences in Schizophrenia: The application of 3D shape models to volumetric MR data", Psychiatry Research Neuroimaging, 2002, 115:15-35 Acrobat Reader format [1.6Mb] Selected for: 2004 IMIA Yearbook of Medical Informatics, Schattauer Publishing Company, Stuttgart, Germany

2002 Peer reviewed full length conference papers

o    Guido Gerig and Martin Styner, Statistical Shape Models for Segmentation and Structural Analysis, invited paper by IEEE International Symposium on Biomedical Imaging (ISBI 2002), Macro to Nano, July 2002 Acrobat Reader format [480Kb]

o    Martin A. Styner, H. C. Charles, Jin Park, and Guido Gerig, Multisite validation of image analysis methods: assessing intra- and intersite variabilityProc. SPIE 4684, 278 (2002); http://dx.doi.org/10.1117/12.467167

o    Moon, Nathan, and Bullitt, Elizabeth, and van Leemput, Koen and Gerig, Guido, Automatic Brain and Tumor Segmentation, Proc. Medical Image Computing and Computer-Assisted Intervention MICCAI 2002, T. Dohi and R. Kikinis (Eds.), Lecture Notes in Computer Science 2488, September 2002 Acrobat Reader format [540Kb]

o    Pizer, Stephen M. and Fletcher, Thomas and Thall, Andrew and Styner, Martin and Gerig, Guido and Joshi, Sarang, Object Models in Multiscale Intrinsic Coordinates via M-reps, accepted GMBV 2002 (Workshop: Generative Model-Based Vision, ECCV2002) Acrobat Reader format [600Kb]

o    Sean Ho, Elizabeth Bullitt, and Guido Gerig , Level Set Evolution with Region Competition: Automatic 3-D Segmentation of Brain Tumors, Proc. 16th Int Conf on Pattern Recognition ICPR 2002, IEEE Computer Society, editors: R. Kasturi, D. Laurendeau, C. Suen, Aug 2002, pp. 532-535 Acrobat Reader format [750Kb]

o    Nathan Moon, Elizabeth Bullitt, Koen van Leemput, and Guido Gerig, Model-Based Brain and Tumor Segmentation, Proc. 16th Int Conf on Pattern Recognition ICPR 2002, editors: R. Kasturi, D. Laurendeau, C. Suen, IEEE Computer Society, Aug.2002, pp. 528-531 Acrobat Reader format [410Kb]

o    M. Styner, C. Charles, J. Park, G. Gerig, Multisite validation of image analysis methods - Assessing intra and inter site variability, Proc. SPIE Vol. 4684, p.278-286, Medical Imaging 2002: Image Processing, Milan Sonka,J. Michael Fitzpatrick, Eds., Feb. 2002 Acrobat Reader format [0.5Mb] Abstract w. full reference

2001 Peer reviewed journal papers

o    J.H. Gilmore, G. Gerig, B. Specter, C. Charles, J. Wilber, B. Herzberg, M.A. Kliewer, Neonatal Cerebral Ventricle Volume: A Comparison of 3D Ultrasound and Magnetic Resonance Imaging, Ultrasound in Med.& Biol.,27(8), pp. 1143-1146, 2001 Acrobat Reader format [98Kb]

o    E. Bullitt, S. Aylward, E. Bernard, and G. Gerig, Computer assisted Visualization of Arteriovenous Malformations on the Home Personal Computer, Neurosurgery, Vol. 48, No. 3, March 2001

2001 Peer reviewed full length conference papers

o    G. Gerig, M. Styner, D. Jones, D. Weinberger, and J. Lieberman, Shape Analysis of brain ventricles using SPHARM, in Proc. Workshop on Mathematical Methods in Biomedical Image Analysis, Proc. MMBIA 2001, IEEE Computer Society, pp. 171-178, Dec. 2001 Acrobat Reader format [1Mb]

o    M. Styner and G. Gerig, Three-dimensional medial shape representation incorporating object variability, in Proc. Computer Vision and Pattern Recognition CVPR 2001, IEEE Computer Society, pp. 651-656, Dec. 2001 Acrobat Reader format [2.6Mb]

o    G Gerig, M Styner, ME Shenton, JA Lieberman, Shape versus Size: Improved Understanding of the Morphology of Brain Structures, Proc. MICCAI 2001, Lecture Notes in Computer Science 2208, pp. 24-32, Oct. 2001 Acrobat Reader format [475Kb]

o    G Gerig, M Jomier and M Chakos, VALMET: A new validation tool for assessing and improving 3D object segmentation, Proc. MICCAI 2001, Lecture Notes in Computer Science 2208, pp. 516-523, Oct. 2001 Acrobat Reader format [170Kb]

o    M. Styner and G. Gerig, Medial models incorporating object variability for 3D shape analysis, Proc. IPMI 2001, LLNCS 2082, Springer, pp. 502-516, June 2001 Acrobat at Springer  Acrobat Reader format [6.9Mb]

o    D. Welti, G. Gerig, E-W. Radue, L. Kappos, and G. Szekely, Spatio-temporal Segmentation of Active Multiple Scleroris Lesions in Serial MRI Data, Proc. IPMI 2001, LLNCS 2082, Springer, pp. 438-445, June 2001 Acrobat at Springer  Acrobat Reader format [6.9Mb]

2000 and earlier

Peer reviewed journal papers

o    M. Styner, G. Gerig, Christian Brechbuehler and Gabor Szekely, Parametric estimate of intensity inhomogeneities applied to MRI, IEEE TMI 19(3), pp. 153-165, 2000 Acrobat Reader format [1.45Kb]

o    Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gábor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data}, Medical Image Analysis (MEDIA), Elsevier, Vol. 4, No. 1, March 2000, pp. 31-42 Acrobat Reader format [900Kb]

o    A. Kelemen, G. Szekely, and G. Gerig, Elastic Model-Based Segmentation of 3-D Neuroradiological Data Sets, IEEE-TMI, Oct. 1999, 18(10):828-839 Acrobat Reader format [1.3Kb] Original TMI Acrobat format [0.62Kb]

o    G. Szekely, A. Kelemen, Ch. Brechbuehler and G. Gerig, Segmentation of 3D objects from MRI volume data using constrained elastic deformations of flexible Fourier surface models, Medical Image Analysis (MEDIA), Vol. 1, No. 1, March 1996, pp. 19-34 gzipped PS-file [4.4Mb] / Acrobat Reader format [3.1Mb]

o    Ch. Brechbühler, G. Gerig and O. Kübler, Parametrization of closed surfaces for 3-D shape description, Computer Vision Image Understanding CVIU, Vol. 61, pp. 154-170, March 1995 Acrobat Reader format [5.1Mb] / Acrobat Reader format, 2pages per sheet [5.2Mb]

Peer reviewed full length conference papers

o    M. Styner and G. Gerig, Hybrid boundary-medial shape description for biologically variable shapes, Proc. of IEEE workshop MMBIA 2000, IEEE, pp. 235-242, June 2000 Acrobat Reader format [2.5Mb]

o    M. Styner and G. Gerig, Brain morphometry by distance measurement in non-Euclidean, curvilinear space, Proc. of IPMI 1999, Springer, LLNCS 1613, pp. 235-242, June 1999 Acrobat Reader format [985Kb]

o    Martin Berger and Guido Gerig, Motion measurements in low contrast X-ray imagery, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 832-841, Oct. 1998 Acrobat Reader format [640Kb]

o    Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gabor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data}, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 469-480, Oct. 1998 Acrobat Reader format [1Mb]

o    Dimitrios Ekatodramis, Gabor Szekely and Guido Gerig, Detecting and Infering Brain Activation from functional MRI by Hypothesis-Testing based on the Likelihood Ratio, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 578-589, Oct. 1998 Acrobat Reader format [385Kb]


o    Gabor Szekely, Thomas Koller, Ron Kikinis, and Guido Gerig, Structural description and combined 3D display for superior analysis of cerebral vascularity from MRA, Proc. SPIE 2359, 272 (1994); http://dx.doi.org/10.1117/12.185187

o    Christian Brechbuehler, Guido Gerig, and Olaf Kuebler, Surface parametrization and shape description, Proc. SPIE 1808, 80 (1992); http://dx.doi.org/10.1117/12.131069

Books and Book Chapters

o    Neda Sadeghi, Guido Gerig, and John H. Gilmore. Modeling brain growth and development. In Brain Mapping: An Encyclopedic Reference: Volume 1: Acquisition Methods, Methods and Modeling, volume 1, pages 429-436. Feb 2015

o    Durrleman, S.; Fletcher, T.; Gerig, G.; Niethammer, M.; Pennec, X.(Eds.), Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data, Third International Workshop, STIA 2014, Held in Conjunction with MICCAI 2014, Boston, Sept. 18, 2014, Proceedings, Publisher: Springer, Series: Lecture Notes in Computer Science, Vol. 8682, Subseries: Image Processing, Computer Vision, Pattern Recognition, and Graphics, 2015, 89 p. 35 illus.

o    Durrleman, S.; Fletcher, T.; Gerig, G.; Niethammer, M. (Eds.), Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Second International Workshop, STIA 2012, Held in Conjunction with MICCAI 2012, Nice, France, Oct. 1, 2012, Proceedings, Publisher: Springer, Series: Lecture Notes in Computer Science, Vol. 7570, Subseries: Image Processing, Computer Vision, Pattern Recognition, and Graphics, 2012, X, 163 p. 73 illus.

o    Rueckert D, Hawkes D, Gerig G, Yang GZ., MedIA Journal, Elsiveer, Sept 2010, Special Issue, Med Image Anal. 2010 Oct;14(5):631-2. PMID: 20627174

o    James S. Duncan and Guido Gerig, "Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2005", Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. LNCS 3749 and 3750

o    Lin, Weili, An, Hongy, Chen, Yasheng, Nicholas, Peter, Zhai, GuiHua, Gerig, Guido, Gilmore, John, and Bullitt, Elizabeth, "Practical Consideration for 3T imaging" , Magn Reson Imaging Clin N Am (W.B. Saunders Company, Elsevier), 11(2003), 615-639 (Book Chapter)

o    Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gabor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data, TO BE UPDATED, 2002

o    Guido Gerig, Gabor Szekely, Cyril Burger, Digital Image Processing for functional analysis, in Functional Imaging - Principles and Methods, edited by von Schulthess, Gustav Konrand and Hennig, Jurgen, Lippincott-Raven Publishers, 1998, pp. 115-156

o    Gabor Szekely, Thomas Koller, Ron Kikinis, and Guido Gerig, Structural description and combined 3-D display for superior analysis of cerebral vascularity from MRA, in Medical Imaging, L. Beolchi and M.H. Kuhn, editors, Studies in Health Technology and Informatics, Vol. 19, IOS Press, 1995, pp. 183-194

o    Ross Whitaker and Guido Gerig, Vector-valued diffusion, pp. 93-134, in: Geometry-Driven Diffusion in Computer Vision, edited by Bart M. ter Haar Romeny, Kluwer Academic Publishers, Series on Computational Imaging and Vision, Volume 1, October 1994

Technical Reports

o    Statistical analysis of diffusion tensor image data based on first principles Matthew Gribbin, Meagan Clement, Keith Muller, Michele Poe, Carissa Cascio, Matthew Jomier, Joseph Piven, and Guido Gerig, March 2006

o    Statistics of Pose and Shape in Multi-Object Complexes using Principal Geodesic Analysis Martin Styner, Kevin Gorczowski, Tom Fletcher, Ja Yeon Jeong, Stephen M. Pizer, Guido Gerig, March 2006

o    Sean Ho and Guido Gerig, Profile Scale Spaces for Statistical Image Match, UNC Technical Report, Jan. 2004

o    Pierre Fillard, John Gilmore, Weili Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths", UNC Technical Report, Jan. 2004

o    Sean Ho, Heather Cody, Guido Gerig, "SNAP: A Software Package for User-Guided Geodesic Snake Segmentation", Technical Report, April 2003 Acrobat Reader format [1.5Mb]

o    Sean Ho and Guido Gerig, "Profile Scale-Space for Image Segmentation", Technical Report UNC CS, March 2003

o    Ho, Sean and Kim, Yongjik and Bullitt, Elizabeth and Gerig, Guido, Medical image segmentation by 3-D level set evolution, Technical Report UNC Chapel Hill, March 1, 2002 Acrobat Reader format [840Kb]

Abstracts (back to 2001)

·         Rebecca C. Knickmeyer, Y. Sampath K. Vetsa, Weili Lin, Dianne Evans, Kathy Wilber, Keith J. Smith, Guido Gerig, John H. Gilmore A Structural MRI Study of Human Brain Development from Birth to Age 2, accepted abstract /oral presentation SOBP 2007 (Society of Biological Psychiatry)

·         John H. Gilmore, Isabelle Corouge, Weili Lin, Guido Gerig Early Development of White Matter Tracts in the Normal Neonate Assessed with High resolution DTI and Quantitative Tractography, accepted abstract ICOS 2007

·         A. Belger, G. Gerig, J. Blocher, H. Gu, D. O. Perkins, J. H. Gilmore Altered Brain Growth And Structure In Children And Adolescents At Genetic Risk For Schizophrenia, accepted oral presentation/abstract ICOS 2007 (Int. Conf. of Schizophrenia Research)

·         Gilmore John, Vesta Yethiraja, Lin Weili, Gerig Guido, Neonatal DTI, 61th Annual Convention: Society of Biological Psychiatry, May 2006

·         Gilmore John, Looney Christopher, Vesta Yethiraja, Smith J. Keith, Lin Weili, Lieberman Jeffery, Gerig Guido, Early Postnatal Brain Structure and Development in Humans: Sexual Dimorphism and Cerebral Asymmetry are Present at Birth, American Congress of Pharmacology ACNP, Dec. 2005

·         Gerig Guido, Gilmore John H, Jomier Matthieu, Joshi Sarang, Piven Joseph, Computational anatomy to assess growth pattern of early brain development in healthy and disease populations, American Congress of Pharmacology ACNP, Dec. 2005

·         Hazlett, H.C., Poe, M., Smith, R.G., Gerig, G., and Piven, J., UPDATE ON A LONGITUDINAL MRI STUDY OF YOUNG CHILDREN WITH AUTISM, Int. Meeting for Autism Research IMFAR, 2005

·         Guido Gerig , Isabelle Corouge, Clement Vachet, Ranga Krishnan and James MacFall, Quantitative Analysis of Diffusion Properties of White Matter Fiber Tracts: A Validation Study, International Society of Magnetic Resonance ISMRM, May 2005 (peer reviewed long abstract)

·         Guido Gerig, Weili Lin, Sampath Vetsa, John Gilmore, Assessing White Matter Growth Trajectory of Early Neonatal Development by 3T MR-DTI, , International Society of Magnetic Resonance ISMRM, May 2005 (peer reviewed long abstract)

·         G. Gerig and John H. Gilmore, Early Brain Development Assessed by new Quantitative Analysis of structural MRI and DTI, Society of Biological Psychiatry SOBP, Invited Symposium, May 2005

·         G. Gerig, S Joshi, H Gu, D Perkins, RG Steen, R Hamer, JA Lieberman, Automatic pipeline for quantitative brain tissue segmentation and parcellation: Experience with a large longitudinal schizophrenia MRI study, Int. Cong. of Schizophrenia ICOS, March 2005

·         M. El-Sayed, L. Sikich, C. Charles, G. Gerig, M. Styner, S. Joshi, J. Lieberman, Morphometric MRI study in childhood and adolescent psychoses, , 51st Annual Meeting of the AACAP (American Acedemy of Child & Adult Psychiatry), Washington, 2004.

·         G. Gerig and John Gilmore, Neonatal Brain Development Assessed by new Quantitative Analysis of High-field 3Tesla MRI and DTI, American College of Neuropharmacology ACNP, Invited Symposium, Dec. 2004

·         ME Shenton, G Gerig, JS Kwon, C Deutsch, M Kubicki, RW McCarley "Midline-Bacum Septi Pellucidi Abnormalities, Hippocampal Shape Abnormalities, and Diffusion Tensor Corpus Callosum Asymmetry Abnormalities in Schizophrenia", Collegium Internationale Neuro-Psychopharmacologicum XXIVth CINP, June 23 2004

·         Guido Gerig, Pierre Fillard, Marcellinus Prastawa, Weili Lin, John H. Gilmore, "Neonatal Brain Development Assessed by new Quantitative Analysis of High-field 3Tesla MRI and DTI", Society of Biological Psychiatry SOBP, April 29 - May 1, 2004

·         Mohamed Elsayed, Linmarie Sikich, Cecil Charles, Sarang Joshi, Guido Gerig, Jeffrey A. Lieberman, "Volumetric MRI Study in Childhood and Adolescent Psychosis" , Society of Biological Psychiatry SOBP, April 29 - May 1, 2004

·         Guido Gerig, Pierre Fillard, Marcel Prastawa, Weili Lin and John Gilmore, "New quantitative analysis of high-field 3T MRI/DTI to assess neonatal brain development", ACNP 2003, December 2003, Abstract

·         M Styner, G. Gerig, E Kistner, K Muller, JA Lieberman, "Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 208, Abstract

·         G Gerig, M Styner, DW Jones, DR Weinberger, JA Lieberman, "Ventricular shape of monozygotic twins discordant for schizophrenia reflects vulnerability", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 194, Abstract

·         JH Gilmore, G Zhai, W Lin, K Wilber, G Gerig, "White Matter Development in Newborns Assessed with Diffusion Tensor Imaging", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 195, Abstract

·         G Gerig, M Styner, M Chakos, JA Lieberman, Hippocampal Shape Alterations in Schizophrenia: Results of a new Methodology, 11th Biennial Winter Workshop on Schizophrenia, Feb. 26, 2002, Abstract.

·         M Styner, G Gerig, DW Jones, DR Weinberger, JA Lieberman, Lateralized Differences in ventricular Shape in monozygotic Twins discordant for Schizophrenia, 11th Biennial Winter Workshop on Schizophrenia, Feb. 26, 2002, Abstract.

·         M. Styner, D.W. Jones, D Weinberger, JA Lieberman, G Gerig, "Shape analysis of ventricular structures in mono- and dizygotic twin study", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 167, Abstract

·         J Park, G Gerig, M Chakos, *D Vandermeulen, JA Lieberman, "Neuroimaging of Psychiatry Disease: Reliabl e and efficient automatic brain tissue segmentation for increased sensitivity", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 163, Abstract

·         S. Schobel, Miranda Chakos, Guido Gerig, Henry Bridges, Hongbin Gu, Cecil Charles, Jeffrey Lieberman, "Duration and Severity of Illness and Hippocampal Volume in Schizophrenia as Assessed by 3-D Manual Segmentation", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 165, Abstract

·         H Bridges, M Chakos, G Gerig, S Schobel, C Charles, H Gu, J Lieberman, "Association of Duration and Se verity of Illness and Superior Temporal Gyrus Volume as Assessed by 3-D Manual Segmentation Measurements in Male Schizophrenic Patients", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 151, Abstract

·         G Gerig, M Jomier, M Chakos, JA Lieberman, "Segmentation of hippocampal shape: Improved reliability by 2D and 3D visualization of segmented objects and of intra-/inter-rater variability", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 154, Abstract

·         M Chakos, S Schobel, G Gerig, Cecil Charles, HB Gu, D Bradford, J Lieberman, "Clinical correlates of Structural Brain Abnormalities in Male Schizophrenic Patients", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 152, Abstract

·         J.H. Gilmore, G. Gerig, B. Specter, C. Charles, J.S. Wilbur, B.S. Hertzberg, M.A. Kliever, "Neonatal Cerebral Ventricle volume: A comparison of 3D ultrasound and MRI", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 152, Abstract























































Sharma A., Gerig G. (2020) Trajectories from Distribution-Valued Functional Curves: A Unified Wasserstein Framework. In: Martel A.L. et al. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science, vol 12267. Springer, Cham. https://doi.org/10.1007/978-3-030-59728-3_34